ATTED-II : GeneCoexpression result

Species	Gene	Description
mtr-u.5	25493016	sm-like protein LSM8
mtr-r.5	25493016	sm-like protein LSM8
gma-u.5	100809048	sm-like protein LSM8
gma-u.5	100305829	uncharacterized LOC100305829
ppo-u.5	7463898	sm-like protein LSM8
ath-u.5	LSM8	Small nuclear ribonucleoprotein family protein
vvi-u.5	100247782	sm-like protein LSM8
sly-u.5	101267415	sm-like protein LSM8
osa-u.5	4339810	sm-like protein LSM8
zma-u.5	100284021	uncharacterized LOC100284021

functional annotation

KEGG

mtr03018 [list] [network] RNA degradation (117 genes)

mtr03040 [list] [network] Spliceosome (435 genes)

GO BP

GO:0000398 [list] [network] mRNA splicing, via spliceosome

(155 genes)

IEA

GO CC

GO:0005688 [list] [network] U6 snRNP	(7 genes)	IEA
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex	(25 genes)	IEA
GO:0071011 [list] [network] precatalytic spliceosome	(26 genes)	IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(294 genes)

IEA

Protein

XP_013456843.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 1, nucl 1, mito 1, extr 1, chlo_mito 1

(predict for XP_013456843.1)

Subcellular
localization
TargetP

other 8

(predict for XP_013456843.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 25493016	mtr-r.5 for 25493016	gma-u.5 for 100809048	gma-u.5 for 100305829	ppo-u.5 for 7463898	ath-u.5 for LSM8	vvi-u.5 for 100247782	sly-u.5 for 101267415	osa-u.5 for 4339810	zma-u.5 for 100284021

Ortholog ID: 7455

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LSM8

Function^*

sm-like protein LSM8

uncharacterized LOC100305829

sm-like protein LSM8

Small nuclear ribonucleoprotein family protein

sm-like protein LSM8

uncharacterized LOC100284021

sm-like protein LSM8

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	15
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	6
gma03010	Ribosome	5
gma03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	10
ppo03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	8
ath03018	RNA degradation	3
ath03020	RNA polymerase	3
ath03420	Nucleotide excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	7
bra03040	Spliceosome	3
bra03440	Homologous recombination	2
bra03018	RNA degradation	2
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	3
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	8
ghi03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	4
ghi03018	RNA degradation	4
ghi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	6
cit03040	Spliceosome	4
cit03018	RNA degradation	3
cit04122	Sulfur relay system	2
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	3
sly03040	Spliceosome	3
sly03020	RNA polymerase	2
sly03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4
sot03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	6
nta03018	RNA degradation	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	9
nta03018	RNA degradation	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3
osa03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	10
zma03018	RNA degradation	3
zma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	2
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3
tae03040	Spliceosome	3
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	7
hvu03040	Spliceosome	4
hvu03018	RNA degradation	3
hvu03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	8
sbi03018	RNA degradation	4
sbi03020	RNA polymerase	2
sbi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	8
bdi03010	Ribosome	7
bdi03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

25493016

100809048

100305829

7463898

842881

103852294

103831065

100247782

107939866

107938625

111199285

102610236

101267415

102588843

107774569

107796155

4339810

100284021

123183428

123071084

123452804

110430611

100838688

5720453

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 25493016 (mtr-u.5 coexpression data)

Top 50 enrichment test to 25493016 (mtr-u.5 coexpression data)


Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	2	2	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 25493016 (mtr-u.5 coexpression data)

Top 50 enrichment test to 25493016 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**