ATTED-II : GeneCoexpression result

Species	Gene	Description
mtr-u.5	25495088	DNA repair RAD52-like protein 2, chloroplastic
mtr-r.5	25495088	DNA repair RAD52-like protein 2, chloroplastic
gma-u.5	100306634	uncharacterized LOC100306634
ppo-u.5	7497566	DNA repair RAD52-like protein 2, chloroplastic
ppo-u.5	7477769	DNA repair RAD52-like protein 2, chloroplastic
ath-u.5	RAD52-2	cobalt ion-binding protein
vvi-u.5	100260946	DNA repair RAD52-like protein 2, chloroplastic
sly-u.5	101259907	DNA repair RAD52-like protein 2, chloroplastic
osa-u.5	4334803	DNA repair RAD52-like protein 2, chloroplastic
osa-u.5	4347552	DNA repair RAD52-like protein 2, chloroplastic
zma-u.5	100285521	snRK1-interacting protein 1
zma-u.5	100281219	uncharacterized LOC100281219

functional annotation

KEGG

GO BP

GO:0000724 [list] [network] double-strand break repair via homologous recombination

(67 genes)

IEA

GO CC

GO MF

GO:0003677 [list] [network] DNA binding

(2104 genes)

IEA

Protein

XP_013450703.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, nucl 2, cyto_nucl 2, extr 1, vacu 1, chlo_mito 1

(predict for XP_013450703.2)

Subcellular
localization
TargetP

chlo 7

(predict for XP_013450703.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 25495088 .	mtr-r.5 for 25495088 .	gma-u.5 for 100306634 .	ppo-u.5 for 7497566 .	ppo-u.5 for 7477769 .	ath-u.5 for RAD52-2 .	vvi-u.5 for 100260946 .	sly-u.5 for 101259907 .	osa-u.5 for 4334803 .	osa-u.5 for 4347552 .	zma-u.5 for 100285521 .	zma-u.5 for 100281219 .

Ortholog ID: 4136

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

RAD52-2

Function^*

cobalt ion-binding protein

uncharacterized LOC100306634

DNA repair RAD52-like protein 2, chloroplastic

snRK1-interacting protein 1

uncharacterized LOC100281219

DNA repair RAD52-like protein 2, chloroplastic

uncharacterized LOC102587460

hypothetical protein

DNA repair RAD52-like protein 2, chloroplastic

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01230	Biosynthesis of amino acids	9
ath00400	Phenylalanine, tyrosine and tryptophan biosynthesis	6
ath01200	Carbon metabolism	3
ath00010	Glycolysis / Gluconeogenesis	2
ath00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	8
gma00400	Phenylalanine, tyrosine and tryptophan biosynthesis	4
gma01230	Biosynthesis of amino acids	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00510	N-Glycan biosynthesis	2
sly03060	Protein export	2
sly01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01230	Biosynthesis of amino acids	9
osa00400	Phenylalanine, tyrosine and tryptophan biosynthesis	8
osa01200	Carbon metabolism	2
osa00940	Phenylpropanoid biosynthesis	2
osa00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00900	Terpenoid backbone biosynthesis	6
zma00541	Biosynthesis of various nucleotide sugars	2
zma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01230	Biosynthesis of amino acids	8
zma00400	Phenylalanine, tyrosine and tryptophan biosynthesis	6
zma01200	Carbon metabolism	5
zma00010	Glycolysis / Gluconeogenesis	2
zma00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01230	Biosynthesis of amino acids	13
bra00400	Phenylalanine, tyrosine and tryptophan biosynthesis	11
bra00350	Tyrosine metabolism	3
bra00999	Biosynthesis of various plant secondary metabolites	3
bra00360	Phenylalanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01230	Biosynthesis of amino acids	8
bra00400	Phenylalanine, tyrosine and tryptophan biosynthesis	6
bra00940	Phenylpropanoid biosynthesis	5
bra01200	Carbon metabolism	4
bra00670	One carbon pool by folate	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01230	Biosynthesis of amino acids	3
vvi00630	Glyoxylate and dicarboxylate metabolism	2
vvi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00940	Phenylpropanoid biosynthesis	6
ppo00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
ppo01230	Biosynthesis of amino acids	3
ppo00360	Phenylalanine metabolism	2
ppo00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01230	Biosynthesis of amino acids	3
ppo00940	Phenylpropanoid biosynthesis	3
ppo00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
ppo04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01240	Biosynthesis of cofactors	3
mtr00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
mtr01230	Biosynthesis of amino acids	3
mtr00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00030	Pentose phosphate pathway	4
tae01200	Carbon metabolism	4
tae01230	Biosynthesis of amino acids	4
tae00710	Carbon fixation by Calvin cycle	3
tae00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	6
ghi00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	7
ghi01230	Biosynthesis of amino acids	7
ghi00350	Tyrosine metabolism	5
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
ghi00360	Phenylalanine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00400	Phenylalanine, tyrosine and tryptophan biosynthesis	7
bna01230	Biosynthesis of amino acids	7
bna00010	Glycolysis / Gluconeogenesis	2
bna00071	Fatty acid degradation	2
bna00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna01200	Carbon metabolism	7
bna00280	Valine, leucine and isoleucine degradation	4
bna00410	beta-Alanine metabolism	4
bna00640	Propanoate metabolism	4
bna00030	Pentose phosphate pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00400	Phenylalanine, tyrosine and tryptophan biosynthesis	9
sot01230	Biosynthesis of amino acids	9
sot04141	Protein processing in endoplasmic reticulum	5
sot04145	Phagosome	3
sot00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01230	Biosynthesis of amino acids	3
bdi00230	Purine metabolism	2
bdi00010	Glycolysis / Gluconeogenesis	2
bdi00620	Pyruvate metabolism	2
bdi00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00900	Terpenoid backbone biosynthesis	5

Expression

Expression pattern

Entrez Gene ID^*

834838

100306634

101259907

4347552

4334803

100285521

100281219

103837233

103874910

100260946

7477769

7497566

25495088

123101460

123114362

107941127

107901978

106363988

125596275

8058991

8061404

102587460

102625430

100825351

100828030

107808210

107832824

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 25495088 (mtr-u.5 coexpression data)

Top 50 enrichment test to 25495088 (mtr-u.5 coexpression data)


Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	sot	hvu	tae	cit	sbi	ghi	cre	bna	nta	bdi	bra
Paralog	2	1	2	1	1	1	2	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 25495088 (mtr-u.5 coexpression data)

Top 50 enrichment test to 25495088 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**