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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25499391   transcriptional activator DEMETER 
 mtr-r.5   25499391   transcriptional activator DEMETER 
 mtr-u.5   11424215   DNA glycosylase/AP lyase ROS1 
 gma-u.5   100779756   DNA glycosylase/AP lyase ROS1 
 gma-u.5   100787368   protein ROS1A 
 ppo-u.5   7491643   transcriptional activator DEMETER 
 ppo-u.5   18100071   DNA glycosylase/AP lyase ROS1 
 ppo-u.5   7479830   transcriptional activator DEMETER 
 ath-u.5   DML1   demeter-like 1 
 ath-u.5   DML2   demeter-like 2 
 ath-u.5   DML3   demeter-like protein 3 
 vvi-u.5   100247223   transcriptional activator DEMETER 
 vvi-u.5   100257983   transcriptional activator DEMETER 
 sly-u.5   DML1   DNA demethylase1 
 sly-u.5   DML4   DNA demethylase 4 
 sly-u.5   DML2   DNA demethylase 2 
 osa-u.5   4338940   protein ROS1 
 osa-u.5   4329407   DNA glycosylase/AP lyase ROS1 
 zma-u.5   100280151   uncharacterized LOC100280151 
 zma-u.5   100382817   uncharacterized LOC100382817 
 zma-u.5   109939959   protein ROS1A 

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Top 50 coexpressed genes to 25499391 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 25499391 (mtr-u.5 coexpression data)

CoexMap"25499391"


mtrLOC25499391 | Entrez gene ID : 25499391      
Species mtr gma ppo ath vvi sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 3 2 3 3 2 3 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0141166 [list] [network] chromosomal 5-methylcytosine DNA demethylation pathway  (7 genes)  IEA  
GO:0006284 [list] [network] base-excision repair  (32 genes)  IEA  
GO CC
GO MF
GO:0035514 [list] [network] DNA demethylase activity  (11 genes)  IEA  
GO:0019104 [list] [network] DNA N-glycosylase activity  (25 genes)  IEA  
GO:0051539 [list] [network] 4 iron, 4 sulfur cluster binding  (29 genes)  IEA  
Protein XP_024626255.2 [sequence] [blastp]
XP_039683392.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_024626255.2)
nucl 9  (predict for XP_039683392.1)
Subcellular
localization
TargetP
other 7  (predict for XP_024626255.2)
other 7  (predict for XP_039683392.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25499391
mtr-r.5
for
25499391
mtr-u.5
for
11424215
gma-u.5
for
100779756
gma-u.5
for
100787368
ppo-u.5
for
7491643
ppo-u.5
for
18100071
ppo-u.5
for
7479830
ath-u.5
for
DML1
ath-u.5
for
DML2
ath-u.5
for
DML3
vvi-u.5
for
100247223
vvi-u.5
for
100257983
sly-u.5
for
DML1
sly-u.5
for
DML4
sly-u.5
for
DML2
osa-u.5
for
4338940
osa-u.5
for
4329407
zma-u.5
for
100280151
zma-u.5
for
100382817
zma-u.5
for
109939959


Ortholog ID: 951
Species mtr gma ppo ppo ath ath bra bra vvi ghi ghi bna bna cit cit sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC25483895 LOC100788292 LOC18096903 LOC7479830 DML1 DML3 LOC103847276 LOC103867278 LOC100247223 LOC107902775 LOC107918161 LOC125609294 LOC106433122 LOC102619180 LOC102612881 DML4 DML2 LOC102594068 LOC102605689 LOC107760412 LOC107813452 LOC4338944 LOC9271145 LOC103630409 LOC100280151 LOC123064105 LOC123141492 LOC123446041 LOC123452140 LOC8061201 LOC8072510 LOC100823585 LOC100844361 CHLRE_07g355466v5
Function* DNA glycosylase/AP lyase ROS1 DNA glycosylase/AP lyase ROS1 DEMETER-like protein 3 transcriptional activator DEMETER demeter-like 1 demeter-like protein 3 transcriptional activator DEMETER DNA glycosylase/AP lyase ROS1 transcriptional activator DEMETER uncharacterized LOC107902775 transcriptional activator DEMETER DNA glycosylase/AP lyase ROS1-like transcriptional activator DEMETER-like DNA glycosylase/AP lyase ROS1-like DNA glycosylase/AP lyase ROS1 DNA demethylase 4 DNA demethylase 2 transcriptional activator DEMETER-like protein ROS1 DNA glycosylase/AP lyase ROS1 protein ROS1A-like protein ROS1C-like protein ROS1A-like Protein ROS1 uncharacterized LOC100280151 protein ROS1C protein ROS1C protein ROS1C-like protein ROS1A-like protein ROS1 uncharacterized LOC8072510 protein ROS1 protein ROS1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04142 Lysosome 3
mtr00562 Inositol phosphate metabolism 2
mtr04070 Phosphatidylinositol signaling system 2
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00620 Pyruvate metabolism 3
bra01200 Carbon metabolism 3
bra00010 Glycolysis / Gluconeogenesis 2
bra00020 Citrate cycle (TCA cycle) 2
bra00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
ghi03440 Homologous recombination 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00310 Lysine degradation 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03082 ATP-dependent chromatin remodeling 2
nta03022 Basal transcription factors 2
nta04120 Ubiquitin mediated proteolysis 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 2
bdi04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 25483895 100788292 18096903 7479830 818224 829552 103847276 103867278 100247223 107902775 107918161 125609294 106433122 102619180 102612881 101251080 101263652 102594068 102605689 107760412 107813452 4338944 9271145 103630409 100280151 123064105 123141492 123446041 123452140 8061201 8072510 100823585 100844361 66054234
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