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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25499482   mediator of RNA polymerase II transcription subunit 27 
 mtr-r.5   25499482   mediator of RNA polymerase II transcription subunit 27 
 gma-u.5   100796886   mediator of RNA polymerase II transcription subunit 27 
 gma-u.5   100782776   mediator of RNA polymerase II transcription subunit 27 
 ppo-u.5   7488095   mediator of RNA polymerase II transcription subunit 27 
 ath-u.5   AT3G09180   mediator of RNA polymerase II transcription subunit 
 vvi-u.5   100258667   mediator of RNA polymerase II transcription subunit 27 
 sly-u.5   101247160   mediator of RNA polymerase II transcription subunit 27 
 osa-u.5   4326197   mediator of RNA polymerase II transcription subunit 27 
 zma-u.5   100193632   uncharacterized LOC100193632 
 zma-u.5   100274560   Mediator of RNA polymerase II transcription subunit 27 

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Top 50 coexpressed genes to 25499482 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 25499482 (mtr-u.5 coexpression data)

CoexMap"25499482"


mtrLOC25499482 | Entrez gene ID : 25499482      
Species mtr gma ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 2 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (425 genes)  IEA  
GO CC
GO:0016592 [list] [network] mediator complex  (47 genes)  IEA  
GO MF
GO:0003713 [list] [network] transcription coactivator activity  (38 genes)  IEA  
Protein XP_013450209.1 [sequence] [blastp]
XP_039683653.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  extr 2,  chlo_mito 2,  nucl 1,  cysk_nucl 1  (predict for XP_013450209.1)
chlo 4,  extr 2,  chlo_mito 2,  nucl 1,  cysk_nucl 1  (predict for XP_039683653.1)
Subcellular
localization
TargetP
chlo 5,  other 3  (predict for XP_013450209.1)
chlo 5,  other 3  (predict for XP_039683653.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25499482

.
mtr-r.5
for
25499482

.
gma-u.5
for
100796886

.
gma-u.5
for
100782776

.
ppo-u.5
for
7488095

.
ath-u.5
for
AT3G09180

.
vvi-u.5
for
100258667

.
sly-u.5
for
101247160

.
osa-u.5
for
4326197

.
zma-u.5
for
100193632

.
zma-u.5
for
100274560

.


Ortholog ID: 7988
Species ath gma gma sly osa zma zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT3G09180 LOC100782776 LOC100796886 LOC101247160 LOC4326197 LOC100193632 LOC100274560 LOC103870565 LOC103859315 LOC100258667 LOC7488095 LOC25499482 LOC123061030 LOC123069618 LOC123443454 LOC107928222 LOC107925683 LOC106401295 LOC106439220 CHLRE_12g510750v5 LOC8074500 LOC102590084 LOC102624786 LOC100846695 LOC107767511 LOC107830769
Function* mediator of RNA polymerase II transcription subunit mediator of RNA polymerase II transcription subunit 27 mediator of RNA polymerase II transcription subunit 27 mediator of RNA polymerase II transcription subunit 27 mediator of RNA polymerase II transcription subunit 27 uncharacterized LOC100193632 Mediator of RNA polymerase II transcription subunit 27 mediator of RNA polymerase II transcription subunit 27 mediator of RNA polymerase II transcription subunit 27 mediator of RNA polymerase II transcription subunit 27 mediator of RNA polymerase II transcription subunit 27 mediator of RNA polymerase II transcription subunit 27 mediator of RNA polymerase II transcription subunit 27 mediator of RNA polymerase II transcription subunit 27 mediator of RNA polymerase II transcription subunit 27 mediator of RNA polymerase II transcription subunit 27 mediator of RNA polymerase II transcription subunit 27 mediator of RNA polymerase II transcription subunit 27 mediator of RNA polymerase II transcription subunit 27-like uncharacterized protein mediator of RNA polymerase II transcription subunit 27 mediator of RNA polymerase II transcription subunit 27 mediator of RNA polymerase II transcription subunit 27 mediator of RNA polymerase II transcription subunit 27 mediator of RNA polymerase II transcription subunit 27-like mediator of RNA polymerase II transcription subunit 27
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00240 Pyrimidine metabolism 2
gma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 4
bra00190 Oxidative phosphorylation 4
bra00260 Glycine, serine and threonine metabolism 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 2
ppo03018 RNA degradation 2
ppo00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
tae03050 Proteasome 7
tae03013 Nucleocytoplasmic transport 6
tae03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00071 Fatty acid degradation 2
hvu00280 Valine, leucine and isoleucine degradation 2
hvu01212 Fatty acid metabolism 2
hvu03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 6
sbi03420 Nucleotide excision repair 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 9
bdi03082 ATP-dependent chromatin remodeling 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 6
nta04626 Plant-pathogen interaction 6
nta03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 6
nta04626 Plant-pathogen interaction 6
nta03082 ATP-dependent chromatin remodeling 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820074 100782776 100796886 101247160 4326197 100193632 100274560 103870565 103859315 100258667 7488095 25499482 123061030 123069618 123443454 107928222 107925683 106401295 106439220 5716572 8074500 102590084 102624786 100846695 107767511 107830769
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