ATTED-II : GeneCoexpression result

Species	Gene	Description
mtr-u.5	25500834	protein REVEILLE 5
mtr-r.5	25500834	protein REVEILLE 5
mtr-u.5	25480372	protein REVEILLE 6
gma-u.5	MYB136	MYB transcription factor MYB136
gma-u.5	100783949	transcription factor ASG4-like
gma-u.5	100775747	protein REVEILLE 5
ppo-u.5	7457357	protein REVEILLE 5
ppo-u.5	7468344	protein REVEILLE 6
ppo-u.5	7496991	protein REVEILLE 5
ath-u.5	AT4G01280	Homeodomain-like superfamily protein
ath-u.5	AT5G52660	Homeodomain-like superfamily protein
ath-u.5	ASG4	Homeodomain-like superfamily protein
vvi-u.5	100855334	protein REVEILLE 6
vvi-u.5	100252586	protein REVEILLE 6
sly-u.5	101259846	protein REVEILLE 6
sly-u.5	ARS1	R1-MYB type transcription factor ARS1
osa-u.5	9272080	protein REVEILLE 6
osa-u.5	4341799	protein REVEILLE 6
zma-u.5	100283068	uncharacterized LOC100283068
zma-u.5	100274468	uncharacterized LOC100274468

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003677 [list] [network] DNA binding

(2104 genes)

IEA

Protein

XP_013444782.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for XP_013444782.1)

Subcellular
localization
TargetP

chlo 6, other 4

(predict for XP_013444782.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 25500834	mtr-r.5 for 25500834	mtr-u.5 for 25480372	gma-u.5 for MYB136	gma-u.5 for 100783949	gma-u.5 for 100775747	ppo-u.5 for 7457357	ppo-u.5 for 7468344	ppo-u.5 for 7496991	ath-u.5 for AT4G01280	ath-u.5 for AT5G52660	ath-u.5 for ASG4	vvi-u.5 for 100855334	vvi-u.5 for 100252586	sly-u.5 for 101259846	sly-u.5 for ARS1	osa-u.5 for 9272080	osa-u.5 for 4341799	zma-u.5 for 100283068	zma-u.5 for 100274468

Ortholog

Ortholog ID: 2040

Species

mtr

gma

ppo

ath

bra

vvi

ghi

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

ASG4

ARS1

Function^*

protein REVEILLE 5

protein REVEILLE 6

protein REVEILLE 5

protein REVEILLE 6

Homeodomain-like superfamily protein

protein REVEILLE 3

protein REVEILLE 6

protein REVEILLE 5

protein REVEILLE 3-like

protein REVEILLE 6

R1-MYB type transcription factor ARS1

protein REVEILLE 6

protein REVEILLE 3-like

protein REVEILLE 6

uncharacterized LOC100274468

uncharacterized LOC100283068

protein REVEILLE 8

protein REVEILLE 6

protein REVEILLE 6-like

protein REVEILLE 6

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03022	Basal transcription factors	3
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	7
ppo04016	MAPK signaling pathway - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01232	Nucleotide metabolism	2
ppo01240	Biosynthesis of cofactors	2
ppo00500	Starch and sucrose metabolism	2
ppo03013	Nucleocytoplasmic transport	2
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2
bra00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2
cit03018	RNA degradation	2
cit00010	Glycolysis / Gluconeogenesis	2
cit01200	Carbon metabolism	2
cit01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04712	Circadian rhythm - plant	6
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	6
tae00790	Folate biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00860	Porphyrin metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

25500834

25480372

100794389

100775747

7496991

7468344

835343

839337

103844654

103844751

100855334

100252586

107942656

107940393

127900936

102627121

101259846

101257705

102586661

102583130

107827724

107786318

9272080

4341799

100274468

100283068

123165247

123157324

123402347

123411095

8076033

8083191

100832932

100821927

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 25500834 (mtr-u.5 coexpression data)

Top 50 enrichment test to 25500834 (mtr-u.5 coexpression data)


Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	3	3	3	3	2	2	2	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 25500834 (mtr-u.5 coexpression data)

Top 50 enrichment test to 25500834 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**