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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25501062   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 mtr-r.5   25501062   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 mtr-u.5   25501065   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 mtr-u.5   25501064   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 gma-u.5   100789210   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 ppo-u.5   18102041   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 ppo-u.5   7480077   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 ppo-u.5   7465013   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 ath-u.5   CCD1   carotenoid cleavage dioxygenase 1 
 vvi-u.5   100249903   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 vvi-u.5   CCD1   9,10[9',10']carotenoid cleavage dioxygenase 
 sly-u.5   CCD1A   carotenoid cleavage dioxygenase 1A 
 sly-u.5   CCD1B   carotenoid cleavage dioxygenase 1B 
 osa-u.5   4352923   carotenoid 9,10(9',10')-cleavage dioxygenase 
 zma-u.5   732715   white cap1 

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Top 50 coexpressed genes to 25501062 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 25501062 (mtr-u.5 coexpression data)

CoexMap"25501062"


mtrLOC25501062 | Entrez gene ID : 25501062      
Species mtr gma ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 1 3 1 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016121 [list] [network] carotene catabolic process  (13 genes)  IEA  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (100 genes)  IEA  
GO MF
GO:0010436 [list] [network] carotenoid dioxygenase activity  (13 genes)  IEA  
Protein XP_013445064.1 [sequence] [blastp]
XP_039685161.1 [sequence] [blastp]
XP_039685162.1 [sequence] [blastp]
XP_039685163.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 5,  mito 2  (predict for XP_013445064.1)
chlo 6,  chlo_mito 5,  mito 2  (predict for XP_039685161.1)
chlo 7,  chlo_mito 5,  mito 1  (predict for XP_039685162.1)
chlo 7,  chlo_mito 5,  mito 1  (predict for XP_039685163.1)
Subcellular
localization
TargetP
mito 6,  chlo 3  (predict for XP_013445064.1)
mito 6,  chlo 3  (predict for XP_039685161.1)
mito 6,  chlo 3  (predict for XP_039685162.1)
mito 6,  chlo 3  (predict for XP_039685163.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25501062

.
mtr-r.5
for
25501062

.
mtr-u.5
for
25501065

.
mtr-u.5
for
25501064

.
gma-u.5
for
100789210

.
ppo-u.5
for
18102041

.
ppo-u.5
for
7480077

.
ppo-u.5
for
7465013

.
ath-u.5
for
CCD1

.
vvi-u.5
for
100249903

.
vvi-u.5
for
CCD1

.
sly-u.5
for
CCD1A

.
sly-u.5
for
CCD1B

.
osa-u.5
for
4352923

.
zma-u.5
for
732715

.


Ortholog ID: 3244
Species ath gma sly sly osa zma bra bra vvi vvi ppo ppo mtr tae hvu hvu ghi ghi bna bna cre cre sbi sot sot cit cit bdi bdi nta nta
Symbol CCD1 LOC100789210 CCD1B CCD1A LOC4352923 LOC732715 LOC103842221 LOC103862738 CCD1 LOC100249903 LOC7480077 LOC18102041 LOC25501062 LOC123113824 LOC123395340 LOC123451037 LOC107915783 LOC107950632 LOC106368588 LOC106368590 CHLRE_16g657750v5 CHLRE_16g657800v5 LOC8080590 LOC102589202 LOC102582614 LOC102616031 LOC102615521 LOC100821646 LOC100832496 LOC107817154 LOC107830214
Function* carotenoid cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid cleavage dioxygenase 1B carotenoid cleavage dioxygenase 1A carotenoid 9,10(9',10')-cleavage dioxygenase white cap1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 9,10[9',10']carotenoid cleavage dioxygenase carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase-like carotenoid 9,10(9',10')-cleavage dioxygenase-like carotenoid 9,10(9',10')-cleavage dioxygenase-like carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1-like carotenoid 9,10(9',10')-cleavage dioxygenase 1 uncharacterized protein uncharacterized protein carotenoid 9,10(9',10')-cleavage dioxygenase carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1-like carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1-like carotenoid 9,10(9',10')-cleavage dioxygenase carotenoid 9,10(9',10')-cleavage dioxygenase carotenoid 9,10(9',10')-cleavage dioxygenase 1-like carotenoid 9,10(9',10')-cleavage dioxygenase 1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 2
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 4
mtr00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
hvu00910 Nitrogen metabolism 2
hvu01310 Nitrogen cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 6
sot00710 Carbon fixation by Calvin cycle 5
sot00630 Glyoxylate and dicarboxylate metabolism 4
sot00196 Photosynthesis - antenna proteins 2
sot00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 3
cit01200 Carbon metabolism 2
cit00860 Porphyrin metabolism 2
cit04016 MAPK signaling pathway - plant 2
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cit01240 Biosynthesis of cofactors 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00196 Photosynthesis - antenna proteins 4
nta00195 Photosynthesis 3
nta04146 Peroxisome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825527 100789210 544269 543935 4352923 732715 103842221 103862738 100232972 100249903 7480077 18102041 25501062 123113824 123395340 123451037 107915783 107950632 106368588 106368590 5723400 5723401 8080590 102589202 102582614 102616031 102615521 100821646 100832496 107817154 107830214
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