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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25502228   beta-amylase 3, chloroplastic 
 mtr-r.5   25502228   beta-amylase 3, chloroplastic 
 gma-u.5   100805981   beta-amylase 3, chloroplastic 
 gma-u.5   100787834   beta-amylase 1, chloroplastic 
 ppo-u.5   7465329   beta-amylase 1, chloroplastic 
 ppo-u.5   7467061   beta-amylase 1, chloroplastic 
 vvi-u.5   100258256   beta-amylase 1, chloroplastic 
 cit-r.1   102622262   beta-amylase 1, chloroplastic-like 
 sly-u.5   101246166   beta-amylase 3, chloroplastic 
 sot-r.1   102598794   beta-amylase 1, chloroplastic-like 
 nta-r.1   107760458   beta-amylase 1, chloroplastic 
 nta-r.1   107805468   beta-amylase 1, chloroplastic 
 osa-u.5   9268236   beta-amylase 1, chloroplastic-like 
 zma-u.5   100192000   beta amylase4 
 zma-u.5   100194176   Beta-amylase 3 chloroplastic 
 tae-r.2   123077920   beta-amylase 1, chloroplastic 
 tae-r.2   123069423   beta-amylase 1, chloroplastic 
 tae-r.2   123060843   beta-amylase 1, chloroplastic 
 hvu-r.1   123443292   beta-amylase 1, chloroplastic-like 
 sbi-r.1   8077549   beta-amylase 1, chloroplastic 
 bdi-r.1   100839500   beta-amylase 1, chloroplastic 

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Top 50 coexpressed genes to 25502228 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 25502228 (mtr-u.5 coexpression data)

CoexMap"25502228"


mtrLOC25502228 | Entrez gene ID : 25502228      
Species mtr gma ppo vvi cit sly sot nta osa zma tae hvu sbi bdi bna cre ath bra ghi
Paralog 2 2 2 1 1 1 1 2 1 2 3 1 1 1 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG mtr00500 [list] [network] Starch and sucrose metabolism (181 genes)
GO BP
GO:0000272 [list] [network] polysaccharide catabolic process  (98 genes)  IEA  
GO CC
GO MF
GO:0016161 [list] [network] beta-amylase activity  (10 genes)  IEA  
Protein XP_013447245.1 [sequence] [blastp]
XP_024629039.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  vacu 1  (predict for XP_013447245.1)
chlo 8,  vacu 1  (predict for XP_024629039.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_013447245.1)
chlo 9  (predict for XP_024629039.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25502228
mtr-r.5
for
25502228
gma-u.5
for
100805981
gma-u.5
for
100787834
ppo-u.5
for
7465329
ppo-u.5
for
7467061
vvi-u.5
for
100258256
cit-r.1
for
102622262
sly-u.5
for
101246166
sot-r.1
for
102598794
nta-r.1
for
107760458
nta-r.1
for
107805468
osa-u.5
for
9268236
zma-u.5
for
100192000
zma-u.5
for
100194176
tae-r.2
for
123077920
tae-r.2
for
123069423
tae-r.2
for
123060843
hvu-r.1
for
123443292
sbi-r.1
for
8077549
bdi-r.1
for
100839500


Ortholog ID: 12335
Species mtr gma gma ppo ppo vvi cit sly sot nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol LOC25502228 LOC100805981 LOC100787834 LOC7465329 LOC7467061 LOC100258256 LOC102622262 LOC101246166 LOC102598794 LOC107760458 LOC107805468 LOC9268236 LOC100192000 LOC100194176 LOC123077920 LOC123069423 LOC123060843 LOC123443292 LOC8077549 LOC100839500
Function* beta-amylase 3, chloroplastic beta-amylase 3, chloroplastic beta-amylase 1, chloroplastic beta-amylase 1, chloroplastic beta-amylase 1, chloroplastic beta-amylase 1, chloroplastic beta-amylase 1, chloroplastic-like beta-amylase 3, chloroplastic beta-amylase 1, chloroplastic-like beta-amylase 1, chloroplastic beta-amylase 1, chloroplastic beta-amylase 1, chloroplastic-like beta amylase4 Beta-amylase 3 chloroplastic beta-amylase 1, chloroplastic beta-amylase 1, chloroplastic beta-amylase 1, chloroplastic beta-amylase 1, chloroplastic-like beta-amylase 1, chloroplastic beta-amylase 1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 4
gma00860 Porphyrin metabolism 3
gma00970 Aminoacyl-tRNA biosynthesis 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00785 Lipoic acid metabolism 2
ppo01240 Biosynthesis of cofactors 2
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 3
ppo00785 Lipoic acid metabolism 2
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03060 Protein export 3
sot04814 Motor proteins 2
sot03013 Nucleocytoplasmic transport 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 4
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 4
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 2
zma00051 Fructose and mannose metabolism 2
zma00520 Amino sugar and nucleotide sugar metabolism 2
zma00541 Biosynthesis of various nucleotide sugars 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 25502228 100805981 100787834 7465329 7467061 100258256 102622262 101246166 102598794 107760458 107805468 9268236 100192000 100194176 123077920 123069423 123060843 123443292 8077549 100839500
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