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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   petD   cytochrome b6/f complex subunit IV 
 sly-u.5   petD   cytochrome b6/f complex subunit IV 
 ath-u.5   petD   cytochrome b6/f complex subunit IV 
 gma-u.5   petD   cytochrome b6/f complex subunit 4 
 vvi-u.5   petD   cytochrome b6/f complex subunit 4 
 ppo-u.5   petD   cytochrome b6/f complex subunit IV 
 mtr-u.5   120580180   cytochrome b6-f complex subunit 4 
 mtr-u.5   petD   cytochrome b6/f complex subunit IV 
 osa-u.5   petD   cytochrome b6/f complex subunit IV 
 zma-u.5   petD   cytochrome b6/f complex subunit IV 

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Top 50 coexpressed genes to petD (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to petD (sot-r.1 coexpression data)

CoexMap"4099875"


sotpetD | Entrez gene ID : 4099875    
Species sot sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi tae bna ghi
Paralog 1 1 1 1 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sot00195 [list] [network] Photosynthesis (86 genes)
GO BP
GO CC
GO MF
Protein YP_635670.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 5,  golg 2,  vacu 1,  chlo 1,  E.R. 1  (predict for YP_635670.1)
Subcellular
localization
TargetP
other 9  (predict for YP_635670.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
petD

.
sly-u.5
for
petD

.
ath-u.5
for
petD

.
gma-u.5
for
petD

.
vvi-u.5
for
petD

.
ppo-u.5
for
petD

.
mtr-u.5
for
120580180

.
mtr-u.5
for
petD

.
osa-u.5
for
petD

.
zma-u.5
for
petD

.


Ortholog ID: 11812
Species ath gma sly osa zma vvi ppo mtr mtr ghi sbi sot cit bdi nta
Symbol petD petD petD petD petD petD petD LOC120580180 petD petD petD petD petD petD petD
Function* cytochrome b6/f complex subunit IV cytochrome b6/f complex subunit 4 cytochrome b6/f complex subunit IV cytochrome b6/f complex subunit IV cytochrome b6/f complex subunit IV cytochrome b6/f complex subunit 4 cytochrome b6/f complex subunit IV cytochrome b6-f complex subunit 4 cytochrome b6/f complex subunit IV cytochrome b6/f complex subunit 4 cytochrome b6/f complex subunit IV cytochrome b6/f complex subunit IV cytochrome b6/f complex subunit IV cytochrome b6/f complex subunit IV cytochrome b6/f complex subunit 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 14
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 10
gma00190 Oxidative phosphorylation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 14
sly00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 12
osa00190 Oxidative phosphorylation 5
osa03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 10
zma03010 Ribosome 3
zma00190 Oxidative phosphorylation 2
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 16
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 9
ppo03010 Ribosome 6
ppo00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 11
mtr03010 Ribosome 2
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 10
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 8
ghi01200 Carbon metabolism 5
ghi00630 Glyoxylate and dicarboxylate metabolism 3
ghi00710 Carbon fixation by Calvin cycle 3
ghi00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 8
sbi00190 Oxidative phosphorylation 5
sbi03010 Ribosome 4
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 12
sot03010 Ribosome 4
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 9
cit00195 Photosynthesis 7
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 10
bdi00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 9
nta00190 Oxidative phosphorylation 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844728 3989328 3950401 3131404 845193 4025130 4929704 120580180 5333124 3989135 4549222 4099875 4271183 6439850 800494
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