ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	rpoC1	RNA polymerase beta' subunit
gma-u.5	rpoC1	RNA polymerase beta' chain
vvi-u.5	rpoC1	RNA polymerase beta' chain
ppo-u.5	rpoC1	RNA polymerase beta' subunit
mtr-u.5	120580069	DNA-directed RNA polymerase subunit beta'
mtr-u.5	120579359	DNA-directed RNA polymerase subunit beta'
mtr-u.5	rpoC1	RNA polymerase beta' subunit
sly-u.5	rpoC1	RNA polymerase beta subunit
osa-u.5	rpoC1	RNA polymerase beta' subunit
zma-u.5	118475931	DNA-directed RNA polymerase subunit beta'

functional annotation

KEGG

brp03020 [list] [network] RNA polymerase (79 genes)

GO BP

GO CC

GO MF

Protein

YP_009553758.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, mito 1, plas 1, mito_plas 1, chlo 1, nucl 1, pero 1, cysk 1, cyto_mito 1, cysk_nucl 1, golg_plas 1, E.R._plas 1

(predict for YP_009553758.1)

Subcellular
localization
TargetP

mito 6, other 4

(predict for YP_009553758.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for rpoC1	gma-u.5 for rpoC1	vvi-u.5 for rpoC1	ppo-u.5 for rpoC1	mtr-u.5 for 120580069	mtr-u.5 for 120579359	mtr-u.5 for rpoC1	sly-u.5 for rpoC1	osa-u.5 for rpoC1	zma-u.5 for 118475931

Ortholog ID: 3178

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

sbi

bdi

Symbol

rpoC1

rpoC1

rpoC1

rpoC1

Function^*

DNA-directed RNA polymerase subunit beta'

RNA polymerase beta' subunit

RNA polymerase beta' chain

DNA-directed RNA polymerase subunit beta'-like

RNA polymerase beta' subunit

RNA polymerase beta' chain

RNA polymerase beta' subunit

DNA-directed RNA polymerase subunit beta'

RNA polymerase beta subunit

RNA polymerase beta' subunit

RNA polymerase beta' chain

RNA polymerase beta' subunit

DNA-directed RNA polymerase subunit beta'

RNA polymerase beta' subunit

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00195	Photosynthesis	6
bra03020	RNA polymerase	3
bra00630	Glyoxylate and dicarboxylate metabolism	2
bra00710	Carbon fixation by Calvin cycle	2
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	3
ath03020	RNA polymerase	3
ath00190	Oxidative phosphorylation	3
ath00195	Photosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	3
ghi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	3
ghi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00195	Photosynthesis	8
cit00190	Oxidative phosphorylation	5
cit03020	RNA polymerase	3
cit01200	Carbon metabolism	3
cit00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	8
gma03010	Ribosome	6
gma03020	RNA polymerase	4
gma00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00195	Photosynthesis	5
vvi00190	Oxidative phosphorylation	3
vvi03020	RNA polymerase	3
vvi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	8
ppo03020	RNA polymerase	5
ppo00195	Photosynthesis	3
ppo00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	7
sly03020	RNA polymerase	3
sly03010	Ribosome	3
sly00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00195	Photosynthesis	5
sot03010	Ribosome	4
sot03020	RNA polymerase	3
sot00190	Oxidative phosphorylation	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00195	Photosynthesis	6
nta00190	Oxidative phosphorylation	3
nta03020	RNA polymerase	3
nta01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00195	Photosynthesis	10
osa03010	Ribosome	6
osa00190	Oxidative phosphorylation	4
osa03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00195	Photosynthesis	7
zma00190	Oxidative phosphorylation	7
zma03020	RNA polymerase	6
zma03010	Ribosome	2
zma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	9
sbi03020	RNA polymerase	4
sbi00195	Photosynthesis	4
sbi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00195	Photosynthesis	7
bdi00190	Oxidative phosphorylation	6
bdi03020	RNA polymerase	3
bdi00630	Glyoxylate and dicarboxylate metabolism	2
bdi00710	Carbon fixation by Calvin cycle	2

Expression

Expression pattern

Entrez Gene ID^*

117131035

125604864

844784

3989196

121220050

4271234

3989292

4025098

4929644

120579358

120579359

3950486

4099931

800521

3131433

118475931

4549133

6439871

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to rpoC1 (ath-u.5 coexpression data)

Top 50 enrichment test to rpoC1 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	1	1	1	1	3	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to rpoC1 (ath-u.5 coexpression data)

Top 50 enrichment test to rpoC1 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**