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Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.5   4330895   replication factor C subunit 3-like 
 osa-r.6   4330895   replication factor C subunit 3-like 
 osa-m.8   4330895   replication factor C subunit 3-like 
 osa-e.1   4330895   replication factor C subunit 3-like 
 zma-u.5   100216703   replication factor C subunit 3 
 ath-u.5   RFC3   replication factor C subunit 3 
 gma-u.5   100805231   replication factor C subunit 3 
 gma-u.5   100782652   replication factor C subunit 3 
 sly-u.5   101264020   replication factor C subunit 3 
 vvi-u.5   100266082   replication factor C subunit 3 
 ppo-u.5   7466453   replication factor C subunit 3 
 mtr-u.5   11414029   replication factor C subunit 3 

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Top 50 coexpressed genes to 4330895 (osa-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 4330895 (osa-u.5 coexpression data)

CoexMap"4330895"


osaLOC4330895 | Entrez gene ID : 4330895      
Species osa zma ath gma sly vvi ppo mtr bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 4 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG osa03030 [list] [network] DNA replication (43 genes)
osa03410 [list] [network] Base excision repair (50 genes)
osa03420 [list] [network] Nucleotide excision repair (81 genes)
osa03430 [list] [network] Mismatch repair (30 genes)
GO BP
GO:0006261 [list] [network] DNA-templated DNA replication  (83 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (289 genes)  IEA  
GO CC
GO:0005663 [list] [network] DNA replication factor C complex  (13 genes)  IEA  
GO:0005634 [list] [network] nucleus  (3003 genes)  IEA  
GO MF
GO:0003689 [list] [network] DNA clamp loader activity  (15 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (413 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1843 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2335 genes)  IEA  
Protein NP_001403878.1 [sequence] [blastp]
Subcellular
localization
wolf
cysk 7,  chlo 1,  cyto 1,  vacu 1,  chlo_mito 1  (predict for NP_001403878.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for NP_001403878.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.5
for
4330895
osa-r.6
for
4330895
osa-m.8
for
4330895
osa-e.1
for
4330895
zma-u.5
for
100216703
ath-u.5
for
RFC3
gma-u.5
for
100805231
gma-u.5
for
100782652
sly-u.5
for
101264020
vvi-u.5
for
100266082
ppo-u.5
for
7466453
mtr-u.5
for
11414029


Ortholog ID: 8776
Species osa tae tae hvu bdi zma sbi ath gma gma sly bra bra vvi ppo mtr ghi ghi bna bna sot cit nta nta cre
Symbol LOC4330895 LOC123138373 LOC123054412 LOC123401909 LOC100821930 LOC100216703 LOC8078394 RFC3 LOC100782652 LOC100805231 LOC101264020 LOC103853075 LOC103830567 LOC100266082 LOC7466453 LOC11414029 LOC121229511 LOC107940558 LOC106353456 LOC106396996 LOC102578520 LOC102612743 LOC107802759 LOC107822500 CHLRE_12g527300v5
Function* replication factor C subunit 3-like replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 5 replication factor C subunit 5 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 5 replication factor C subunit 5 replication factor C subunit 5 replication factor C subunit 5 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 3
osa03410 Base excision repair 3
osa03420 Nucleotide excision repair 3
osa03430 Mismatch repair 3
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 4
tae03083 Polycomb repressive complex 4
tae03410 Base excision repair 4
tae03030 DNA replication 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 4
hvu03018 RNA degradation 2
hvu03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 5
bdi03410 Base excision repair 4
bdi03420 Nucleotide excision repair 4
bdi03430 Mismatch repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 7
zma03420 Nucleotide excision repair 6
zma03430 Mismatch repair 5
zma03410 Base excision repair 4
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 3
sbi03410 Base excision repair 3
sbi03420 Nucleotide excision repair 3
sbi03430 Mismatch repair 3
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 7
ath03410 Base excision repair 7
ath03420 Nucleotide excision repair 5
ath03430 Mismatch repair 5
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 5
gma03420 Nucleotide excision repair 5
gma03430 Mismatch repair 5
gma03410 Base excision repair 4
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 3
gma03410 Base excision repair 3
gma03420 Nucleotide excision repair 3
gma03430 Mismatch repair 3
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 7
sly03030 DNA replication 3
sly03410 Base excision repair 3
sly03420 Nucleotide excision repair 3
sly03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 4
vvi03420 Nucleotide excision repair 4
vvi03430 Mismatch repair 4
vvi03410 Base excision repair 3
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 2
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
ppo03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 4
bna03410 Base excision repair 4
bna03420 Nucleotide excision repair 4
bna03430 Mismatch repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 4
bna03410 Base excision repair 4
bna03420 Nucleotide excision repair 4
bna03430 Mismatch repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03020 RNA polymerase 2
cit00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 6
nta03030 DNA replication 4
nta03430 Mismatch repair 4
nta03440 Homologous recombination 3
nta03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 6
nta03030 DNA replication 4
nta03430 Mismatch repair 4
nta03440 Homologous recombination 4
nta03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 9
cre03410 Base excision repair 6
cre03420 Nucleotide excision repair 6
cre03430 Mismatch repair 6
cre03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 4330895 123138373 123054412 123401909 100821930 100216703 8078394 844083 100782652 100805231 101264020 103853075 103830567 100266082 7466453 11414029 121229511 107940558 106353456 106396996 102578520 102612743 107802759 107822500 5722466
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