ATTED-II : GeneCoexpression result

Species	Gene	Description
osa-u.5	4331698	probable RNA helicase SDE3
osa-r.6	4331698	probable RNA helicase SDE3
osa-m.8	4331698	probable RNA helicase SDE3
osa-e.1	4331698	probable RNA helicase SDE3
zma-u.5	100382450	putative RNA helicase family protein
zma-u.5	103631746	probable RNA helicase SDE3
ath-u.5	SDE3	P-loop containing nucleoside triphosphate hydrolases superfamily protein
gma-u.5	100801796	probable RNA helicase SDE3
sly-u.5	101258662	probable RNA helicase SDE3
sly-u.5	101251686	probable RNA helicase SDE3
vvi-u.5	100247679	probable RNA helicase SDE3
ppo-u.5	18101568	probable RNA helicase SDE3
ppo-u.5	18098912	probable RNA helicase SDE3
mtr-u.5	11441457	probable RNA helicase SDE3
mtr-u.5	11416205	probable RNA helicase SDE3

Annotation

functional annotation

KEGG

GO BP

GO:0035194 [list] [network] regulatory ncRNA-mediated post-transcriptional gene silencing

(24 genes)

IEA

GO CC

GO:0043186 [list] [network] P granule	(3 genes)	IEA
GO:0005829 [list] [network] cytosol	(929 genes)	IEA

GO MF

GO:0032574 [list] [network] 5'-3' RNA helicase activity	(1 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1223 genes)	IEA

Protein

XP_015627765.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 4, cyto_nucl 4

(predict for XP_015627765.1)

Subcellular
localization
TargetP

other 9

(predict for XP_015627765.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4331698	osa-r.6 for 4331698	osa-m.8 for 4331698	osa-e.1 for 4331698	zma-u.5 for 100382450	zma-u.5 for 103631746	ath-u.5 for SDE3	gma-u.5 for 100801796	sly-u.5 for 101258662	sly-u.5 for 101251686	vvi-u.5 for 100247679	ppo-u.5 for 18101568	ppo-u.5 for 18098912	mtr-u.5 for 11441457	mtr-u.5 for 11416205

Ortholog

Ortholog ID: 7397

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

SDE3

Function^*

probable RNA helicase SDE3

putative RNA helicase family protein

probable RNA helicase SDE3

P-loop containing nucleoside triphosphate hydrolases superfamily protein

probable RNA helicase SDE3

putative RNA helicase SDE3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04626	Plant-pathogen interaction	4
hvu03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	2
bdi00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03420	Nucleotide excision repair	3
sbi03040	Spliceosome	3
sbi03030	DNA replication	2
sbi03410	Base excision repair	2
sbi03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	3
gma00670	One carbon pool by folate	3
gma00240	Pyrimidine metabolism	2
gma00790	Folate biosynthesis	2
gma01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00010	Glycolysis / Gluconeogenesis	2
sly00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00520	Amino sugar and nucleotide sugar metabolism	3
mtr00290	Valine, leucine and isoleucine biosynthesis	2
mtr00650	Butanoate metabolism	2
mtr00660	C5-Branched dibasic acid metabolism	2
mtr00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00520	Amino sugar and nucleotide sugar metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00040	Pentose and glucuronate interconversions	4
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04814	Motor proteins	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00590	Arachidonic acid metabolism	2
nta00790	Folate biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

4331698

123084864

123098491

123449501

100840158

103631746

100382450

8082158

837047

100801796

101251686

101258662

103844125

100247679

18101568

18098912

11441457

11416205

107928604

107888690

106371189

111197903

102582644

102615655

102619574

107821118

107787108

66055727

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 4331698 (osa-u.5 coexpression data)

Top 50 enrichment test to 4331698 (osa-u.5 coexpression data)


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	2	1	1	2	1	2	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4331698 (osa-u.5 coexpression data)

Top 50 enrichment test to 4331698 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**