ATTED-II : GeneCoexpression result

Species	Gene	Description
osa-u.5	4334040	cyclin-H1-1-like
osa-r.6	4334040	cyclin-H1-1-like
osa-m.8	4334040	cyclin-H1-1-like
osa-e.1	4334040	cyclin-H1-1-like
zma-u.5	100283483	uncharacterized LOC100283483
ath-u.5	CYCH;1	cyclin H;1
gma-u.5	547736	cyclin-H1-1
gma-u.5	100800023	cyclin-H1-1
gma-u.5	100790589	cyclin-H1-1
sly-u.5	101248768	cyclin-H1-1
sly-u.5	101246966	cyclin-H1-1
vvi-u.5	100252789	cyclin-H1-1
ppo-u.5	18098692	cyclin-H1-1
mtr-u.5	11415666	cyclin-H1-1

functional annotation

KEGG

osa03022 [list] [network] Basal transcription factors (47 genes)

osa03420 [list] [network] Nucleotide excision repair (81 genes)

GO BP

GO:0000079 [list] [network] regulation of cyclin-dependent protein serine/threonine kinase activity	(64 genes)	IEA
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II	(380 genes)	IEA

GO CC

GO:0070985 [list] [network] transcription factor TFIIK complex	(2 genes)	IEA
GO:0005634 [list] [network] nucleus	(3003 genes)	IEA

GO MF

GO:0016538 [list] [network] cyclin-dependent protein serine/threonine kinase regulator activity

(56 genes)

IEA

Protein

NP_001405638.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, nucl 4

(predict for NP_001405638.1)

Subcellular
localization
TargetP

other 6, mito 5

(predict for NP_001405638.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4334040	osa-r.6 for 4334040	osa-m.8 for 4334040	osa-e.1 for 4334040	zma-u.5 for 100283483	ath-u.5 for CYCH;1	gma-u.5 for 547736	gma-u.5 for 100800023	gma-u.5 for 100790589	sly-u.5 for 101248768	sly-u.5 for 101246966	vvi-u.5 for 100252789	ppo-u.5 for 18098692	mtr-u.5 for 11415666

Ortholog ID: 3843

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

CYCH;1

Function^*

cyclin-H1-1-like

cyclin-H1-1

cyclin-H1-1-like

cyclin-H1-1

uncharacterized LOC100283483

cyclin-H1-1

cyclin H;1

cyclin-H1-1

cyclin-H1-1-like

cyclin-H1-1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4
tae03018	RNA degradation	3
tae03022	Basal transcription factors	2
tae03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	4
hvu03040	Spliceosome	3
hvu03460	Fanconi anemia pathway	2
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2
zma03040	Spliceosome	2
zma03022	Basal transcription factors	2
zma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00970	Aminoacyl-tRNA biosynthesis	3
sbi03022	Basal transcription factors	2
sbi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2
gma03022	Basal transcription factors	2
gma03420	Nucleotide excision repair	2
gma00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03030	DNA replication	7
sly03420	Nucleotide excision repair	3
sly03430	Mismatch repair	2
sly03460	Fanconi anemia pathway	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2
ppo03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03420	Nucleotide excision repair	3
mtr00970	Aminoacyl-tRNA biosynthesis	3
mtr03010	Ribosome	3
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03022	Basal transcription factors	11
ghi03420	Nucleotide excision repair	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03022	Basal transcription factors	11
ghi03420	Nucleotide excision repair	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	3
bna03420	Nucleotide excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	2
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00340	Histidine metabolism	2
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta03022	Basal transcription factors	2
nta03420	Nucleotide excision repair	2
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	2
nta03420	Nucleotide excision repair	2

Expression

Expression pattern

Entrez Gene ID^*

4334040

123086938

123091038

123447709

123409592

100830061

100283483

8060506

832824

100800023

100790589

101248768

101246966

103854664

100252789

18098692

11415666

107927309

107915052

111200847

102603534

102594849

102628605

107783076

107795645

5718336

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 4334040 (osa-u.5 coexpression data)

Top 50 enrichment test to 4334040 (osa-u.5 coexpression data)


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	1	1	3	2	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4334040 (osa-u.5 coexpression data)

Top 50 enrichment test to 4334040 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**