ATTED-II : GeneCoexpression result

Species	Gene	Description
osa-u.5	4338287	polygalacturonase At1g48100
osa-r.6	4338287	polygalacturonase At1g48100
osa-e.1	4338287	polygalacturonase At1g48100
osa-u.5	4326721	polygalacturonase At1g48100
osa-u.5	4326983	polygalacturonase At1g48100
zma-u.5	100284066	polygalacturonase
zma-u.5	103635108	polygalacturonase At1g48100
zma-u.5	100194076	uncharacterized LOC100194076
ath-u.5	AT1G02460	Pectin lyase-like superfamily protein
ath-u.5	AT1G48100	Pectin lyase-like superfamily protein
gma-u.5	PG7	polygalacturonase precursor
gma-u.5	100820085	polygalacturonase At1g48100
gma-u.5	100809979	polygalacturonase At1g48100
sly-u.5	101266864	polygalacturonase At1g48100
sly-u.5	101261316	polygalacturonase At1g48100
sly-u.5	101259291	polygalacturonase At1g48100
vvi-u.5	100263206	polygalacturonase At1g48100
vvi-u.5	100264928	polygalacturonase At1g48100
ppo-u.5	7498233	polygalacturonase At1g48100
mtr-u.5	11410191	polygalacturonase At1g48100
mtr-u.5	11412440	polygalacturonase At1g48100
mtr-u.5	11435306	polygalacturonase At1g48100

Annotation

functional annotation

KEGG

GO BP

GO:0005975 [list] [network] carbohydrate metabolic process

(757 genes)

IEA

GO CC

GO MF

GO:0004650 [list] [network] polygalacturonase activity

(43 genes)

IEA

Protein

XP_015638814.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, extr 2, E.R. 1, cyto 1, plas 1, E.R._vacu 1, cyto_plas 1

(predict for XP_015638814.1)

Subcellular
localization
TargetP

scret 6, mito 3

(predict for XP_015638814.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4338287	osa-r.6 for 4338287	osa-e.1 for 4338287	osa-u.5 for 4326721	osa-u.5 for 4326983	zma-u.5 for 100284066	zma-u.5 for 103635108	zma-u.5 for 100194076	ath-u.5 for AT1G02460	ath-u.5 for AT1G48100	gma-u.5 for PG7	gma-u.5 for 100820085	gma-u.5 for 100809979	sly-u.5 for 101266864	sly-u.5 for 101261316	sly-u.5 for 101259291	vvi-u.5 for 100263206	vvi-u.5 for 100264928	ppo-u.5 for 7498233	mtr-u.5 for 11410191	mtr-u.5 for 11412440	mtr-u.5 for 11435306

Ortholog

Ortholog ID: 1363

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

mtr

bna

sot

cit

nta

Symbol

Function^*

polygalacturonase At1g48100

polygalacturonase At1g48100-like

polygalacturonase At1g48100

uncharacterized LOC100194076

polygalacturonase At1g48100

Pectin lyase-like superfamily protein

polygalacturonase At1g48100

polygalacturonase At1g48100-like

polygalacturonase At1g48100

polygalacturonase At1g48100-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00940	Phenylpropanoid biosynthesis	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00010	Glycolysis / Gluconeogenesis	3
hvu00710	Carbon fixation by Calvin cycle	3
hvu01200	Carbon metabolism	3
hvu01230	Biosynthesis of amino acids	3
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	2
bra00190	Oxidative phosphorylation	2
bra01200	Carbon metabolism	2
bra00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta02010	ABC transporters	2
nta04981	Folate transport and metabolism	2
nta00040	Pentose and glucuronate interconversions	2
nta04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

4326721

4326983

123160906

123060823

123413542

123410081

100827672

100194076

103635045

8075300

8060309

841228

839443

100797770

101261316

101259291

103871496

103843750

100263206

11410191

11435306

106352669

106370081

102589249

102625396

107802133

107782467

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 4338287 (osa-u.5 coexpression data)

Top 50 enrichment test to 4338287 (osa-u.5 coexpression data)


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	3	2	3	3	2	1	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4338287 (osa-u.5 coexpression data)

Top 50 enrichment test to 4338287 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**