ATTED-II : GeneCoexpression result

Species	Gene	Description
osa-u.5	4349298	tetratricopeptide repeat protein SKI3
osa-r.6	4349298	tetratricopeptide repeat protein SKI3
osa-m.8	4349298	tetratricopeptide repeat protein SKI3
osa-e.1	4349298	tetratricopeptide repeat protein SKI3
zma-u.5	103644768	tetratricopeptide repeat protein SKI3
ath-u.5	AT1G76630	Tetratricopeptide repeat (TPR)-like superfamily protein
gma-u.5	100779830	tetratricopeptide repeat protein SKI3
sly-u.5	101247817	tetratricopeptide repeat protein SKI3
vvi-u.5	100259801	tetratricopeptide repeat protein SKI3
ppo-u.5	7474535	tetratricopeptide repeat protein SKI3
mtr-u.5	25494462	tetratricopeptide repeat protein SKI3

functional annotation

KEGG

osa03018 [list] [network] RNA degradation (114 genes)

GO BP

GO CC

GO:0055087 [list] [network] Ski complex

(3 genes)

IEA

GO MF

GO:0005515 [list] [network] protein binding

(4590 genes)

IEA

Protein

XP_015614539.2 [sequence] [blastp]
XP_066160834.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, nucl_plas 3, cyto 3, chlo 1, plas 1, vacu 1, cysk 1	(predict for XP_015614539.2)
nucl 5, nucl_plas 4, cyto_nucl 4, chlo 1, cysk 1	(predict for XP_066160834.1)

Subcellular
localization
TargetP

other 8	(predict for XP_015614539.2)
mito 6, other 3	(predict for XP_066160834.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4349298	osa-r.6 for 4349298	osa-m.8 for 4349298	osa-e.1 for 4349298	zma-u.5 for 103644768	ath-u.5 for AT1G76630	gma-u.5 for 100779830	sly-u.5 for 101247817	vvi-u.5 for 100259801	ppo-u.5 for 7474535	mtr-u.5 for 25494462

Ortholog ID: 11138

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

tetratricopeptide repeat protein SKI3

Tetratricopeptide repeat (TPR)-like superfamily protein

tetratricopeptide repeat protein SKI3

tetratricopeptide repeat protein SKI3-like

tetratricopeptide repeat protein SKI3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	4
tae00310	Lysine degradation	3
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	2
bdi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2
zma03015	mRNA surveillance pathway	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03460	Fanconi anemia pathway	3
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	6
sly00195	Photosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03022	Basal transcription factors	2
bra03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03082	ATP-dependent chromatin remodeling	2
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	4
ppo03018	RNA degradation	3
ppo03008	Ribosome biogenesis in eukaryotes	2
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03460	Fanconi anemia pathway	2
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03460	Fanconi anemia pathway	2
ghi03018	RNA degradation	2
ghi00230	Purine metabolism	2
ghi00740	Riboflavin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	5
bna03013	Nucleocytoplasmic transport	4
bna04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	6
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot03018	RNA degradation	2
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	3
cit03008	Ribosome biogenesis in eukaryotes	2
cit03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	4
nta03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03013	Nucleocytoplasmic transport	4

Expression

Expression pattern

Entrez Gene ID^*

4349298

123127559

123181591

123438108

100846927

103644768

8062834

843996

100779830

101247817

103832123

100259801

7474535

25494462

107905709

107905746

106421669

106427344

102592859

102614709

107823717

107814605

5726086

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 4349298 (osa-u.5 coexpression data)

Top 50 enrichment test to 4349298 (osa-u.5 coexpression data)


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4349298 (osa-u.5 coexpression data)

Top 50 enrichment test to 4349298 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**