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Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.5   4350758   prolycopene isomerase 1, chloroplastic 
 osa-r.6   4350758   prolycopene isomerase 1, chloroplastic 
 osa-e.1   4350758   prolycopene isomerase 1, chloroplastic 
 zma-u.5   100281663   carotenoid isomerase 2 
 zma-u.5   100281747   carotenoid isomerase 
 ath-u.5   CRTISO   carotenoid isomerase 
 gma-u.5   100811616   prolycopene isomerase, chloroplastic 
 gma-u.5   100798275   prolycopene isomerase, chloroplastic 
 sly-u.5   CRTISO   prolycopene isomerase, chloroplastic 
 vvi-u.5   100263250   prolycopene isomerase, chloroplastic 
 ppo-u.5   7488070   prolycopene isomerase, chloroplastic 
 mtr-u.5   25483622   prolycopene isomerase, chloroplastic 

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Top 50 coexpressed genes to 4350758 (osa-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 4350758 (osa-u.5 coexpression data)

CoexMap"4350758"


osaLOC4350758 | Entrez gene ID : 4350758    
Species osa zma ath gma sly vvi ppo mtr tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 3 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG osa00906 [list] [network] Carotenoid biosynthesis (40 genes)
GO BP
GO:0016117 [list] [network] carotenoid biosynthetic process  (16 genes)  IEA  
GO CC
GO MF
GO:0046608 [list] [network] carotenoid isomerase activity  (1 genes)  IEA  
GO:0016491 [list] [network] oxidoreductase activity  (1418 genes)  IEA  
Protein XP_015617022.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 4,  cyto_mito 2  (predict for XP_015617022.1)
Subcellular
localization
TargetP
mito 7  (predict for XP_015617022.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.5
for
4350758

.
osa-r.6
for
4350758

.
osa-e.1
for
4350758

.
zma-u.5
for
100281663

.
zma-u.5
for
100281747

.
ath-u.5
for
CRTISO

.
gma-u.5
for
100811616

.
gma-u.5
for
100798275

.
sly-u.5
for
CRTISO

.
vvi-u.5
for
100263250

.
ppo-u.5
for
7488070

.
mtr-u.5
for
25483622

.


Ortholog ID: 8680
Species ath gma gma sly osa zma zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi bdi nta nta
Symbol CRTISO LOC100798275 LOC100811616 CRTISO LOC4350758 LOC100281663 LOC100281747 LOC103843494 LOC100263250 LOC7488070 LOC25483622 LOC123109998 LOC123189717 LOC123413860 LOC107940426 LOC107922266 LOC125578640 LOC106420156 CHLRE_16g651923v5 LOC8071947 LOC102591604 LOC102577949 LOC100838443 LOC100840652 LOC107791326 LOC107832559
Function* carotenoid isomerase prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase 1, chloroplastic carotenoid isomerase 2 carotenoid isomerase prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic uncharacterized protein prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 4
gma01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 3
sly00051 Fructose and mannose metabolism 2
sly01240 Biosynthesis of cofactors 2
sly00010 Glycolysis / Gluconeogenesis 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
bra03020 RNA polymerase 2
bra00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00906 Carotenoid biosynthesis 3
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 2
ppo00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 9
mtr00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
tae00010 Glycolysis / Gluconeogenesis 2
tae00030 Pentose phosphate pathway 2
tae00500 Starch and sucrose metabolism 2
tae00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 6
ghi00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 6
ghi00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
bna00062 Fatty acid elongation 2
bna01040 Biosynthesis of unsaturated fatty acids 2
bna01212 Fatty acid metabolism 2
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00906 Carotenoid biosynthesis 4
cre00860 Porphyrin metabolism 4
cre00900 Terpenoid backbone biosynthesis 2
cre00970 Aminoacyl-tRNA biosynthesis 2
cre01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03060 Protein export 2
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 2
bdi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 4
nta00900 Terpenoid backbone biosynthesis 3
nta00061 Fatty acid biosynthesis 2
nta00071 Fatty acid degradation 2
nta01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 6
nta00900 Terpenoid backbone biosynthesis 3
nta00061 Fatty acid biosynthesis 2
nta00071 Fatty acid degradation 2
nta01212 Fatty acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837193 100798275 100811616 101267857 4350758 100281663 100281747 103843494 100263250 7488070 25483622 123109998 123189717 123413860 107940426 107922266 125578640 106420156 5723787 8071947 102591604 102577949 100838443 100840652 107791326 107832559
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