ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-u.5	4351244	uncharacterized LOC4351244
osa-r.6	4351244	uncharacterized LOC4351244
osa-m.8	4351244	uncharacterized LOC4351244
osa-e.1	4351244	uncharacterized LOC4351244
osa-u.5	4349535	uncharacterized LOC4349535
zma-u.5	103647171	uncharacterized LOC103647171
zma-u.5	100384257	RNA binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT2G28540	RNA binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT3G45630	RNA binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT5G60170	RNA binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100796804	uncharacterized LOC100796804
gma-u.5	100801880	uncharacterized LOC100801880
gma-u.5	100807521	uncharacterized LOC100807521
sly-u.5	101251877	uncharacterized LOC101251877
sly-u.5	101252746	endochitinase A-like
sly-u.5	101257555	uncharacterized LOC101257555
vvi-u.5	100267264	general negative regulator of transcription subunit 4
vvi-u.5	104880937	uncharacterized LOC104880937
ppo-u.5	7465293	uncharacterized LOC7465293
ppo-u.5	7488143	uncharacterized LOC7488143
ppo-u.5	18100238	uncharacterized LOC18100238
mtr-u.5	11417361	uncharacterized LOC11417361
mtr-u.5	11406476	uncharacterized LOC11406476
mtr-u.5	25484052	uncharacterized LOC25484052

Top 50 coexpressed genes to 4351244 (osa-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4351244 (osa-u.5 coexpression data)

CoexMap"4351244"

[Cytoscape]

Annotation

functional annotation

KEGG

osa03018 [list] [network] RNA degradation (114 genes)

GO BP

GO:0016567 [list] [network] protein ubiquitination

(501 genes)

IEA

GO CC

GO:0030014 [list] [network] CCR4-NOT complex

(34 genes)

IEA

GO MF

GO:0004842 [list] [network] ubiquitin-protein transferase activity	(377 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1223 genes)	IEA

Protein

XP_015619668.1 [sequence] [blastp]
XP_015619669.1 [sequence] [blastp]
XP_015619670.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for XP_015619668.1)
nucl 9	(predict for XP_015619669.1)
chlo 5, mito 3, nucl 2	(predict for XP_015619670.1)

Subcellular
localization
TargetP

other 9	(predict for XP_015619668.1)
other 9	(predict for XP_015619669.1)
chlo 6	(predict for XP_015619670.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4351244	osa-r.6 for 4351244	osa-m.8 for 4351244	osa-e.1 for 4351244	osa-u.5 for 4349535	zma-u.5 for 103647171	zma-u.5 for 100384257	ath-u.5 for AT2G28540	ath-u.5 for AT3G45630	ath-u.5 for AT5G60170	gma-u.5 for 100796804	gma-u.5 for 100801880	gma-u.5 for 100807521	sly-u.5 for 101251877	sly-u.5 for 101252746	sly-u.5 for 101257555	vvi-u.5 for 100267264	vvi-u.5 for 104880937	ppo-u.5 for 7465293	ppo-u.5 for 7488143	ppo-u.5 for 18100238	mtr-u.5 for 11417361	mtr-u.5 for 11406476	mtr-u.5 for 25484052

Ortholog

Ortholog ID: 1609

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

uncharacterized LOC4351244

uncharacterized LOC4349535

uncharacterized LOC123111438

uncharacterized LOC123103249

uncharacterized LOC123398966

uncharacterized LOC100841785

RNA binding (RRM/RBD/RNP motifs) family protein

uncharacterized LOC100381591

uncharacterized LOC8059223

uncharacterized LOC110429916

RNA binding (RRM/RBD/RNP motifs) family protein

uncharacterized LOC100780302

uncharacterized LOC100801880

uncharacterized LOC101251877

uncharacterized LOC101257555

uncharacterized LOC103864897

general negative regulator of transcription subunit 4

uncharacterized LOC104880937

uncharacterized LOC18100238

uncharacterized LOC7465293

uncharacterized LOC11417361

uncharacterized LOC25484052

uncharacterized LOC107932928

uncharacterized LOC107959061

uncharacterized LOC106419712

uncharacterized LOC106393111

uncharacterized LOC107058215

uncharacterized LOC102604840

uncharacterized LOC102631197

uncharacterized LOC102622069

uncharacterized LOC107767333

uncharacterized LOC107765290

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	2
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	6
tae03013	Nucleocytoplasmic transport	3
tae03015	mRNA surveillance pathway	3
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	5
tae03018	RNA degradation	4
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03250	Viral life cycle - HIV-1	2
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	2
sbi04120	Ubiquitin mediated proteolysis	2
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	4
ath03015	mRNA surveillance pathway	3
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03083	Polycomb repressive complex	3
ath03250	Viral life cycle - HIV-1	3
ath03018	RNA degradation	3
ath03015	mRNA surveillance pathway	3
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	3
gma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	3
gma03460	Fanconi anemia pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2
vvi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04136	Autophagy - other	4
ghi03083	Polycomb repressive complex	3
ghi03018	RNA degradation	2
ghi03015	mRNA surveillance pathway	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	6
bna03015	mRNA surveillance pathway	2
bna04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03022	Basal transcription factors	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2
cit00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4

Expression

Expression pattern

Entrez Gene ID^*

4351244

4349535

123111438

123103249

123398966

100841785

100384257

100381591

8059223

110429916

836139

823705

100780302

100801880

101251877

101257555

103864897

100267264

104880937

18100238

7465293

11417361

25484052

107932928

107959061

106419712

106393111

107058215

102604840

102631197

102622069

107767333

107765290

The preparation time of this page was 0.1 [sec].


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	2	3	3	3	2	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4351244 (osa-u.5 coexpression data)

Top 50 enrichment test to 4351244 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**