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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   psbB   photosystem II 47 kDa protein 
 zma-u.5   psbB   photosystem II 47 kDa protein 
 zma-u.5   118475031   photosystem II CP47 reaction center protein 
 zma-u.5   118475927   cytochrome f 
 osa-u.5   psbB   photosystem II 47 kDa protein 
 ath-u.5   psbB   photosystem II 47 kDa protein 
 gma-u.5   psbB   photosystem II P680 chlorophyll A apoprotein 
 sly-u.5   psbB   photosystem II CP47 chlorophyll apoprotein 
 vvi-u.5   psbB   photosystem II P680 chlorophyll A apoprotein 
 ppo-u.5   psbB   photosystem II 47 kDa protein 
 mtr-u.5   psbB   photosystem II 47 kDa protein 
 mtr-u.5   120580174   photosystem II CP47 reaction center protein 

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Top 50 coexpressed genes to psbB (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to psbB (sbi-r.1 coexpression data)

CoexMap"4549217"


sbipsbB | Entrez gene ID : 4549217      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 3 1 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi00195 [list] [network] Photosynthesis (76 genes)
GO BP
GO CC
GO MF
Protein YP_899433.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 5,  cyto_plas 4,  E.R. 2,  cyto 1,  mito 1,  vacu 1  (predict for YP_899433.1)
Subcellular
localization
TargetP
mito 6,  other 3  (predict for YP_899433.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
psbB

.
zma-u.5
for
psbB

.
zma-u.5
for
118475031

.
zma-u.5
for
118475927

.
osa-u.5
for
psbB

.
ath-u.5
for
psbB

.
gma-u.5
for
psbB

.
sly-u.5
for
psbB

.
vvi-u.5
for
psbB

.
ppo-u.5
for
psbB

.
mtr-u.5
for
psbB

.
mtr-u.5
for
120580174

.


Ortholog ID: 3526
Species ath gma sly osa zma zma bra bra vvi mtr mtr tae hvu ghi bna bna sbi sot cit bdi nta
Symbol psbB psbB psbB psbB LOC118475031 psbB LOC117129785 LOC117126236 psbB LOC120580174 psbB LOC123171099 psbB psbB LOC125602823 LOC125602824 psbB psbB psbB psbB psbB
Function* photosystem II 47 kDa protein photosystem II P680 chlorophyll A apoprotein photosystem II CP47 chlorophyll apoprotein photosystem II 47 kDa protein photosystem II CP47 reaction center protein photosystem II 47 kDa protein photosystem II CP47 reaction center protein photosystem II CP47 reaction center protein photosystem II P680 chlorophyll A apoprotein photosystem II CP47 reaction center protein photosystem II 47 kDa protein photosystem II CP47 reaction center protein photosystem II 47 kDa protein photosystem II P680 chlorophyll A apoprotein photosystem II CP47 reaction center protein photosystem II CP47 reaction center protein photosystem II 47 kDa protein photosystem II 47 kDa protein photosystem II 47 kDa protein photosystem II 47 kDa protein photosystem II P680 chlorophyll A apoprotein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 14
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 13
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03010 Ribosome 2
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 14
sly00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 12
osa00190 Oxidative phosphorylation 6
osa03010 Ribosome 5
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 6
zma00195 Photosynthesis 5
zma00630 Glyoxylate and dicarboxylate metabolism 4
zma00710 Carbon fixation by Calvin cycle 4
zma01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 8
bra00190 Oxidative phosphorylation 4
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 8
bra00190 Oxidative phosphorylation 5
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 16
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 11
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 10
mtr00630 Glyoxylate and dicarboxylate metabolism 5
mtr00710 Carbon fixation by Calvin cycle 5
mtr01200 Carbon metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 15
hvu00190 Oxidative phosphorylation 6
hvu03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 11
ghi00630 Glyoxylate and dicarboxylate metabolism 3
ghi00710 Carbon fixation by Calvin cycle 3
ghi01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 14
bna03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 10
sbi03010 Ribosome 7
sbi00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 13
sot00190 Oxidative phosphorylation 3
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 13
cit00190 Oxidative phosphorylation 5
cit01200 Carbon metabolism 3
cit00630 Glyoxylate and dicarboxylate metabolism 2
cit00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 13
bdi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 12
nta00190 Oxidative phosphorylation 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844733 3989323 3950388 3131410 118475031 845200 117129785 117126236 4025125 120580174 5333163 123171099 4525075 3989130 125602823 125602824 4549217 4099870 4271125 6439814 800527
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