ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	OXS3	oxidative stress 3
bra-r.6	103856812	uncharacterized LOC103856812
bra-r.6	103851817	uncharacterized LOC103851817
bra-r.6	103866046	uncharacterized LOC103866046
bna-r.1	BNAA02G08560D	protein OXIDATIVE STRESS 3 LIKE 2
bna-r.1	106429167	protein OXIDATIVE STRESS 3 LIKE 2-like
ghi-r.1	107962710	uncharacterized LOC107962710
ghi-r.1	107940154	uncharacterized LOC107940154
ghi-r.1	107932278	uncharacterized LOC107932278
cit-r.1	102625611	hypothetical protein
cit-r.1	102613888	hypothetical protein
gma-u.5	100527399	uncharacterized LOC100527399
gma-u.5	100782016	uncharacterized LOC100782016
gma-u.5	100526906	uncharacterized LOC100526906
vvi-u.5	100249745	protein OXIDATIVE STRESS 3
vvi-u.5	100249186	protein OXIDATIVE STRESS 3
ppo-u.5	7470586	protein OXIDATIVE STRESS 3
mtr-u.5	11413760	uncharacterized LOC11413760
mtr-u.5	11415745	uncharacterized LOC11415745
mtr-u.5	11427632	uncharacterized LOC11427632
sly-u.5	101258531	protein OXIDATIVE STRESS 3
sly-u.5	101254072	protein OXIDATIVE STRESS 3
sot-r.1	102603808	uncharacterized protein in LEU2 3'region-like
sot-r.1	102599951	uncharacterized LOC102599951
sot-r.1	102594742	uncharacterized LOC102594742
nta-r.1	107775721	uncharacterized LOC107775721
nta-r.1	107796378	uncharacterized LOC107796378
nta-r.1	107797524	uncharacterized LOC107797524
osa-u.5	4341299	protein OXIDATIVE STRESS 3
osa-u.5	4339366	protein OXIDATIVE STRESS 3 LIKE 4
zma-u.5	100381528	oxidative stress 3
zma-u.5	100501780	uncharacterized LOC100501780
zma-u.5	100193480	uncharacterized LOC100193480
tae-r.2	123182685	uncharacterized LOC123182685
tae-r.2	123185797	uncharacterized LOC123185797
tae-r.2	123147995	uncharacterized LOC123147995
hvu-r.1	123415868	uncharacterized LOC123415868
hvu-r.1	123415205	uncharacterized LOC123415205
sbi-r.1	8076022	uncharacterized LOC8076022
sbi-r.1	8057694	uncharacterized LOC8057694
sbi-r.1	8068950	uncharacterized LOC8068950
bdi-r.1	100827172	uncharacterized LOC100827172
bdi-r.1	100846683	uncharacterized LOC100846683
bdi-r.1	100843946	uncharacterized LOC100843946

Top 50 coexpressed genes to OXS3 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to OXS3 (ath-u.5 coexpression data)

CoexMap"5008166"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_001078449.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, chlo 2, extr 2

(predict for NP_001078449.1)

Subcellular
localization
TargetP

other 6, chlo 3

(predict for NP_001078449.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for OXS3	bra-r.6 for 103856812	bra-r.6 for 103851817	bra-r.6 for 103866046	bna-r.1 for BNAA02G08560D	bna-r.1 for 106429167	ghi-r.1 for 107962710	ghi-r.1 for 107940154	ghi-r.1 for 107932278	cit-r.1 for 102625611	cit-r.1 for 102613888	gma-u.5 for 100527399	gma-u.5 for 100782016	gma-u.5 for 100526906	vvi-u.5 for 100249745	vvi-u.5 for 100249186	ppo-u.5 for 7470586	mtr-u.5 for 11413760	mtr-u.5 for 11415745	mtr-u.5 for 11427632	sly-u.5 for 101258531	sly-u.5 for 101254072	sot-r.1 for 102603808	sot-r.1 for 102599951	sot-r.1 for 102594742	nta-r.1 for 107775721	nta-r.1 for 107796378	nta-r.1 for 107797524	osa-u.5 for 4341299	osa-u.5 for 4339366	zma-u.5 for 100381528	zma-u.5 for 100501780	zma-u.5 for 100193480	tae-r.2 for 123182685	tae-r.2 for 123185797	tae-r.2 for 123147995	hvu-r.1 for 123415868	hvu-r.1 for 123415205	sbi-r.1 for 8076022	sbi-r.1 for 8057694	sbi-r.1 for 8068950	bdi-r.1 for 100827172	bdi-r.1 for 100846683	bdi-r.1 for 100843946

Ortholog

Ortholog ID: 872

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

OXS3

Function^*

oxidative stress 3

uncharacterized LOC103856812

uncharacterized LOC103851817

uncharacterized LOC103866046

protein OXIDATIVE STRESS 3 LIKE 2

uncharacterized LOC107962710

uncharacterized LOC107940154

uncharacterized LOC107891715

hypothetical protein

uncharacterized LOC100527399

uncharacterized LOC100526906

OXS3-like protein

protein OXIDATIVE STRESS 3

uncharacterized LOC11413760

uncharacterized LOC11415745

uncharacterized LOC11427632

protein OXIDATIVE STRESS 3

uncharacterized protein in LEU2 3'region-like

uncharacterized LOC102599951

uncharacterized LOC102579346

uncharacterized LOC107797524

uncharacterized LOC107800085

uncharacterized LOC142166551

protein OXIDATIVE STRESS 3

uncharacterized LOC100501780

OSJNBa0088A01.13-like protein

uncharacterized LOC100275200

uncharacterized LOC123046967

uncharacterized LOC123058523

uncharacterized LOC123137800

uncharacterized LOC123415868

uncharacterized LOC123444364

uncharacterized LOC8068950

uncharacterized LOC100827172

uncharacterized LOC100821814

uncharacterized LOC100823048

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00564	Glycerophospholipid metabolism	2
bra00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	2
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	2
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00030	Pentose phosphate pathway	2
ghi01200	Carbon metabolism	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00030	Pentose phosphate pathway	2
ghi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00100	Steroid biosynthesis	2
nta00561	Glycerolipid metabolism	2
nta00564	Glycerophospholipid metabolism	2
nta00565	Ether lipid metabolism	2
nta00590	Arachidonic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00280	Valine, leucine and isoleucine degradation	11
tae00640	Propanoate metabolism	5
tae00410	beta-Alanine metabolism	4
tae01200	Carbon metabolism	3
tae00785	Lipoic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00270	Cysteine and methionine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00562	Inositol phosphate metabolism	2
bdi04070	Phosphatidylinositol signaling system	2
bdi00500	Starch and sucrose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

835756

103856812

103851817

103866046

106418247

106443278

107962710

107940154

107891715

102625611

102613888

100527399

100526906

100305943

100249745

100249186

100242814

7470586

11413760

11415745

11427632

101258531

101254072

102603808

102599951

102579346

107797524

107800085

142166551

4341299

4327202

100501780

103641918

100275200

123046967

123058523

123137800

123415868

123444364

8068950

100827172

100821814

100823048

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Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	1	3	2	3	2	3	2	1	3	2	3	3	2	3	3	2	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to OXS3 (ath-u.5 coexpression data)

Top 50 enrichment test to OXS3 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**