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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   rpoB   RNA polymerase beta subunit 
 mtr-r.5   rpoB   RNA polymerase beta subunit 
 mtr-u.5   120580065   DNA-directed RNA polymerase subunit beta 
 gma-u.5   rpoB   RNA polymerase beta chain 
 ppo-u.5   rpoB   RNA polymerase beta subunit 
 ppo-u.5   112323823   DNA-directed RNA polymerase subunit beta 
 vvi-u.5   rpoB   RNA polymerase beta chain 
 sly-u.5   rpoB   RNA polymerase beta subunit 
 osa-u.5   rpoB   RNA polymerase beta subunit 

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Top 50 coexpressed genes to rpoB (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to rpoB (mtr-u.5 coexpression data)

CoexMap"5333159"


mtrrpoB | Entrez gene ID : 5333159    
Species mtr gma ppo vvi sly osa sbi nta bra cre hvu cit bdi sot zma tae ath bna ghi
Paralog 3 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG mtr03020 [list] [network] RNA polymerase (74 genes)
GO BP
GO CC
GO MF
Protein YP_001381728.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 2,  cysk 1  (predict for YP_001381728.1)
Subcellular
localization
TargetP
other 8  (predict for YP_001381728.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
rpoB

.
mtr-r.5
for
rpoB

.
mtr-u.5
for
120580065

.
gma-u.5
for
rpoB

.
ppo-u.5
for
rpoB

.
ppo-u.5
for
112323823

.
vvi-u.5
for
rpoB

.
sly-u.5
for
rpoB

.
osa-u.5
for
rpoB

.


Ortholog ID: 3284
Species gma sly osa bra bra vvi ppo ppo mtr mtr hvu hvu ghi bna sbi sot cit bdi nta
Symbol rpoB rpoB rpoB LOC117131034 LOC117126012 rpoB rpoB LOC112323823 rpoB LOC120580065 LOC123419399 LOC123421979 rpoB rpoB rpoB rpoB rpoB rpoB rpoB
Function* RNA polymerase beta chain RNA polymerase beta subunit RNA polymerase beta subunit DNA-directed RNA polymerase subunit beta-like DNA-directed RNA polymerase subunit beta RNA polymerase beta chain RNA polymerase beta subunit DNA-directed RNA polymerase subunit beta RNA polymerase beta subunit DNA-directed RNA polymerase subunit beta DNA-directed RNA polymerase subunit beta DNA-directed RNA polymerase subunit beta RNA polymerase beta chain RNA polymerase beta subunit RNA polymerase beta subunit RNA polymerase beta subunit RNA polymerase beta subunit RNA polymerase beta subunit RNA polymerase beta chain
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 9
gma03020 RNA polymerase 4
gma00195 Photosynthesis 3
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 5
sly00195 Photosynthesis 3
sly03020 RNA polymerase 3
sly03010 Ribosome 3
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 10
osa00190 Oxidative phosphorylation 9
osa03020 RNA polymerase 3
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 6
bra03020 RNA polymerase 3
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 6
bra03020 RNA polymerase 3
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 5
vvi00190 Oxidative phosphorylation 3
vvi03020 RNA polymerase 3
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo00190 Oxidative phosphorylation 5
ppo03020 RNA polymerase 5
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
ppo03020 RNA polymerase 5
ppo00190 Oxidative phosphorylation 3
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 7
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 7
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 3
ghi00190 Oxidative phosphorylation 3
ghi03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 9
sbi03010 Ribosome 5
sbi03020 RNA polymerase 4
sbi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 8
sot03010 Ribosome 4
sot00190 Oxidative phosphorylation 3
sot03020 RNA polymerase 3
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 6
cit00190 Oxidative phosphorylation 6
cit03010 Ribosome 3
cit03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 5
bdi00195 Photosynthesis 5
bdi03020 RNA polymerase 3
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 6
nta00195 Photosynthesis 5
nta03020 RNA polymerase 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 3989291 3950478 3131432 117131034 117126012 4025099 4929645 112323823 5333159 120580065 123419399 123421979 3989197 11542067 4549132 4099994 4271235 6439892 800449
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