Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   541972   histone deacetylase 
 zma-r.6   541972   histone deacetylase 
 zma-m.5   541972   histone deacetylase 
 osa-u.5   4342472   histone deacetylase 15 
 ath-u.5   HDA15   histone deacetylase 15 
 gma-u.5   HDA5   histone deacetylase 
 gma-u.5   HDA17   histone deacetylase 
 sly-u.5   101260413   histone deacetylase 15 
 vvi-u.5   100268092   histone deacetylase 15 
 ppo-u.5   7487094   histone deacetylase 15 
 mtr-u.5   25493939   histone deacetylase 15 

close


Top 50 coexpressed genes to 541972 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 541972 (zma-u.5 coexpression data)

CoexMap"541972"


zmaLOC541972 | Entrez gene ID : 541972      
Species zma osa ath gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0040029 [list] [network] epigenetic regulation of gene expression  (72 genes)  IEA  
GO CC
GO:0000118 [list] [network] histone deacetylase complex  (29 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (5465 genes)  IEA  
GO MF
GO:0004407 [list] [network] histone deacetylase activity  (12 genes)  IEA  
Protein NP_001105095.1 [sequence] [blastp]
XP_020396306.1 [sequence] [blastp]
XP_035816655.1 [sequence] [blastp]
XP_035816656.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 4,  cyto 1,  plas 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for NP_001105095.1)
nucl 4,  chlo 4,  cyto 1,  plas 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for XP_020396306.1)
nucl 9,  chlo 1,  plas 1  (predict for XP_035816655.1)
nucl 8,  chlo 1,  plas 1,  E.R._vacu 1  (predict for XP_035816656.1)
Subcellular
localization
TargetP
other 6  (predict for NP_001105095.1)
other 6  (predict for XP_020396306.1)
other 8  (predict for XP_035816655.1)
other 8  (predict for XP_035816656.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
541972

.
zma-r.6
for
541972

.
zma-m.5
for
541972

.
osa-u.5
for
4342472

.
ath-u.5
for
HDA15

.
gma-u.5
for
HDA5

.
gma-u.5
for
HDA17

.
sly-u.5
for
101260413

.
vvi-u.5
for
100268092

.
ppo-u.5
for
7487094

.
mtr-u.5
for
25493939

.


Ortholog ID: 9491
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol HDA15 HDA17 HDA5 LOC101260413 LOC4342472 LOC541972 LOC103869555 LOC100268092 LOC7487094 LOC25493939 LOC780627 LOC123102365 LOC123395110 LOC107943186 LOC107931050 LOC106367495 LOC111215644 LOC110432512 LOC102603454 LOC102616223 LOC100831369 LOC107761154 LOC107824523
Function* histone deacetylase 15 histone deacetylase histone deacetylase histone deacetylase 15 histone deacetylase 15 histone deacetylase histone deacetylase 15 histone deacetylase 15 histone deacetylase 15 histone deacetylase 15 histone deacetylase 15 histone deacetylase 15 histone deacetylase 15-like histone deacetylase 15 histone deacetylase 15 histone deacetylase 15 histone deacetylase 15 histone deacetylase 15-like histone deacetylase 15 histone deacetylase 15 histone deacetylase 15 histone deacetylase 15 histone deacetylase 15
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 3
osa03040 Spliceosome 3
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 5
zma03018 RNA degradation 3
zma00970 Aminoacyl-tRNA biosynthesis 2
zma03015 mRNA surveillance pathway 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae03008 Ribosome biogenesis in eukaryotes 2
tae04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00053 Ascorbate and aldarate metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna04120 Ubiquitin mediated proteolysis 4
bna03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna04120 Ubiquitin mediated proteolysis 4
bna03082 ATP-dependent chromatin remodeling 2
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03040 Spliceosome 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 16
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 10
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821382 100802870 100804724 101260413 4342472 541972 103869555 100268092 7487094 25493939 780627 123102365 123395110 107943186 107931050 106367495 111215644 110432512 102603454 102616223 100831369 107761154 107824523
The preparation time of this page was 0.1 [sec].