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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   542034   MADS-box transcription factor 47 
 zma-r.6   542034   MADS-box transcription factor 47 
 zma-m.5   542034   MADS-box transcription factor 47 
 zma-u.5   542033   MADS19 
 zma-u.5   542035   MADS-box transcription factor 55 
 zma-u.5   542044   m26 protein 
 osa-u.5   4340495   MADS-box transcription factor 55-like 
 osa-u.5   4330805   MADS-box transcription factor 22-like 
 osa-u.5   4331872   MADS-box transcription factor 47-like 
 ath-u.5   AGL24   AGAMOUS-like 24 
 ath-u.5   SVP   K-box region and MADS-box transcription factor family protein 
 gma-u.5   100808695   MADS-box protein SVP 
 gma-u.5   SVPL   MADS-box protein SVP-like 
 sly-u.5   J   MADS-box protein JOINTLESS 
 sly-u.5   101254194   MADS-box protein AGL24 
 vvi-u.5   100251508   MADS-box protein SVP 
 vvi-u.5   100260900   MADS-box protein SVP 
 ppo-u.5   7486551   MADS-box protein JOINTLESS 
 ppo-u.5   7480191   MADS-box protein SVP 
 ppo-u.5   7461823   MADS-box protein JOINTLESS 
 mtr-u.5   11409914   MADS-box protein JOINTLESS 
 mtr-u.5   11437402   MADS-box protein AGL24 
 mtr-u.5   11407049   MADS-box protein SVP 

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Top 50 coexpressed genes to 542034 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542034 (zma-u.5 coexpression data)

CoexMap"542034"


zmaLOC542034 | Entrez gene ID : 542034      
Species zma osa ath gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 3 2 2 2 2 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (124 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3371 genes)  IEA  
GO MF
GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding  (246 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (663 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1355 genes)  IEA  
Protein NP_001306702.1 [sequence] [blastp]
XP_008651762.1 [sequence] [blastp]
XP_008651766.1 [sequence] [blastp]
XP_035816847.1 [sequence] [blastp]
XP_035816848.1 [sequence] [blastp]
XP_035816850.1 [sequence] [blastp]
XP_035816851.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto_nucl 5  (predict for NP_001306702.1)
nucl 9,  cyto_nucl 5  (predict for XP_008651762.1)
nucl 9,  cyto_nucl 5  (predict for XP_008651766.1)
nucl 9,  cyto_nucl 5  (predict for XP_035816847.1)
nucl 10  (predict for XP_035816848.1)
nucl 10  (predict for XP_035816850.1)
nucl 10  (predict for XP_035816851.1)
Subcellular
localization
TargetP
other 6,  mito 5  (predict for NP_001306702.1)
other 6,  mito 5  (predict for XP_008651762.1)
other 6,  mito 5  (predict for XP_008651766.1)
other 6,  mito 5  (predict for XP_035816847.1)
other 6,  mito 5  (predict for XP_035816848.1)
other 6,  mito 5  (predict for XP_035816850.1)
other 6,  mito 5  (predict for XP_035816851.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
542034

.
zma-r.6
for
542034

.
zma-m.5
for
542034

.
zma-u.5
for
542033

.
zma-u.5
for
542035

.
zma-u.5
for
542044

.
osa-u.5
for
4340495

.
osa-u.5
for
4330805

.
osa-u.5
for
4331872

.
ath-u.5
for
AGL24

.
ath-u.5
for
SVP

.
gma-u.5
for
100808695

.
gma-u.5
for
SVPL

.
sly-u.5
for
J

.
sly-u.5
for
101254194

.
vvi-u.5
for
100251508

.
vvi-u.5
for
100260900

.
ppo-u.5
for
7486551

.
ppo-u.5
for
7480191

.
ppo-u.5
for
7461823

.
mtr-u.5
for
11409914

.
mtr-u.5
for
11437402

.
mtr-u.5
for
11407049

.


Ortholog ID: 2015
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AGL24 SVP SVPL LOC100808695 LOC101254194 J LOC4340495 LOC4330805 LOC542033 LOC542034 LOC103864363 LOC103837880 LOC100260900 LOC100251508 LOC7486551 LOC7480191 LOC11437402 LOC11407049 LOC100137002 LOC123145554 LOC123449650 LOC123411400 LOC107920922 LOC107945005 LOC106394683 LOC106440793 LOC110431897 LOC8080034 MADS16 LOC102605771 LOC102621460 LOC102625387 LOC100821772 LOC100839211 LOC107791218 LOC107807098
Function* AGAMOUS-like 24 K-box region and MADS-box transcription factor family protein MADS-box protein SVP-like MADS-box protein SVP MADS-box protein AGL24 MADS-box protein JOINTLESS MADS-box transcription factor 55-like MADS-box transcription factor 22-like MADS19 MADS-box transcription factor 47 MADS-box protein SVP MADS-box protein SVP MADS-box protein SVP MADS-box protein SVP MADS-box protein JOINTLESS MADS-box protein SVP MADS-box protein AGL24 MADS-box protein SVP MADS-box transcription factor 55 MADS-box transcription factor 22 MADS-box transcription factor 47-like MADS-box transcription factor 55-like MADS-box protein AGL24-like MADS-box protein SVP-like MADS-box protein AGL24 MADS-box protein AGL24-like MADS-box transcription factor 47-like MADS-box transcription factor 55 MADS16 protein MADS-box protein JOINTLESS MADS-box protein JOINTLESS MADS-box protein JOINTLESS-like MADS-box transcription factor 55-like MADS-box transcription factor 22-like MADS-box protein JOINTLESS MADS-box protein JOINTLESS
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
osa00230 Purine metabolism 2
osa00240 Pyrimidine metabolism 2
osa01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 6
osa00230 Purine metabolism 2
osa00240 Pyrimidine metabolism 2
osa01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 6
bra00380 Tryptophan metabolism 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra01200 Carbon metabolism 2
bra04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00380 Tryptophan metabolism 3
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra01200 Carbon metabolism 3
bra04016 MAPK signaling pathway - plant 3
bra04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00910 Nitrogen metabolism 5
mtr01310 Nitrogen cycle 4
mtr01200 Carbon metabolism 2
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00630 Glyoxylate and dicarboxylate metabolism 4
ghi04075 Plant hormone signal transduction 4
ghi00220 Arginine biosynthesis 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 5
ghi00710 Carbon fixation by Calvin cycle 4
ghi01230 Biosynthesis of amino acids 3
ghi00630 Glyoxylate and dicarboxylate metabolism 3
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00940 Phenylpropanoid biosynthesis 3
cit00941 Flavonoid biosynthesis 2
cit00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00940 Phenylpropanoid biosynthesis 3
cit00941 Flavonoid biosynthesis 2
cit00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00730 Thiamine metabolism 2
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828556 816787 100789126 100808695 101254194 101245905 4340495 4330805 542033 542034 103864363 103837880 100260900 100251508 7486551 7480191 11437402 11407049 100137002 123145554 123449650 123411400 107920922 107945005 106394683 106440793 110431897 8080034 102577849 102605771 102621460 102625387 100821772 100839211 107791218 107807098
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