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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   542357   proliferating cell nuclear antigen 2 
 zma-r.6   542357   proliferating cell nuclear antigen 2 
 zma-m.5   542357   proliferating cell nuclear antigen 2 
 zma-u.5   542425   proliferating cell nuclear antigen 1 
 osa-u.5   4331062   proliferating cell nuclear antigen-like 
 ath-u.5   PCNA2   proliferating cell nuclear antigen 2 
 ath-u.5   PCNA1   proliferating cellular nuclear antigen 1 
 gma-u.5   100817651   proliferating cell nuclear antigen 
 gma-u.5   548079   proliferating cell nuclear antigen 
 sly-u.5   pcna   proliferating cell nuclear antigen 
 vvi-u.5   100248466   proliferating cell nuclear antigen-like 
 ppo-u.5   7478554   proliferating cell nuclear antigen 
 ppo-u.5   7481501   proliferating cell nuclear antigen 
 mtr-u.5   25490757   proliferating cell nuclear antigen 

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Top 50 coexpressed genes to 542357 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542357 (zma-u.5 coexpression data)

CoexMap"542357"


zmaLOC542357 | Entrez gene ID : 542357      
Species zma osa ath gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 1 2 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma03030 [list] [network] DNA replication (56 genes)
zma03410 [list] [network] Base excision repair (53 genes)
zma03420 [list] [network] Nucleotide excision repair (94 genes)
zma03430 [list] [network] Mismatch repair (39 genes)
GO BP
GO:0006272 [list] [network] leading strand elongation  (7 genes)  IEA  
GO:0019985 [list] [network] translesion synthesis  (18 genes)  IEA  
GO:0006275 [list] [network] regulation of DNA replication  (19 genes)  IEA  
GO:0006298 [list] [network] mismatch repair  (21 genes)  IEA  
GO CC
GO:0043626 [list] [network] PCNA complex  (2 genes)  IEA  
GO MF
GO:0030337 [list] [network] DNA polymerase processivity factor activity  (2 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2288 genes)  IEA  
Protein NP_001105404.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  chlo 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001105404.1)
Subcellular
localization
TargetP
other 5,  scret 4  (predict for NP_001105404.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
542357

.
zma-r.6
for
542357

.
zma-m.5
for
542357

.
zma-u.5
for
542425

.
osa-u.5
for
4331062

.
ath-u.5
for
PCNA2

.
ath-u.5
for
PCNA1

.
gma-u.5
for
100817651

.
gma-u.5
for
548079

.
sly-u.5
for
pcna

.
vvi-u.5
for
100248466

.
ppo-u.5
for
7478554

.
ppo-u.5
for
7481501

.
mtr-u.5
for
25490757

.


Ortholog ID: 5071
Species ath ath gma gma sly osa zma zma bra bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol PCNA2 PCNA1 LOC548079 LOC100817651 pcna LOC4331062 LOC542357 LOC542425 LOC103868024 LOC103843463 LOC100248466 LOC7478554 LOC7481501 LOC25490757 LOC123146016 LOC123128871 LOC123406159 LOC123427208 LOC121212680 LOC121215525 LOC106451515 LOC106451525 CHLRE_12g515850v5 LOC8056408 LOC102581875 LOC102627400 LOC100843467 LOC107779602 LOC107778290
Function* proliferating cell nuclear antigen 2 proliferating cellular nuclear antigen 1 proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen-like proliferating cell nuclear antigen 2 proliferating cell nuclear antigen 1 proliferating cellular nuclear antigen 1 proliferating cell nuclear antigen proliferating cell nuclear antigen-like proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cellular nuclear antigen 1 proliferating cellular nuclear antigen 1 uncharacterized protein proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 11
ath03420 Nucleotide excision repair 4
ath03430 Mismatch repair 4
ath03082 ATP-dependent chromatin remodeling 4
ath03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 13
ath03420 Nucleotide excision repair 5
ath03430 Mismatch repair 5
ath03440 Homologous recombination 3
ath03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 6
gma00240 Pyrimidine metabolism 5
gma01232 Nucleotide metabolism 5
gma03420 Nucleotide excision repair 4
gma03430 Mismatch repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00240 Pyrimidine metabolism 6
gma01232 Nucleotide metabolism 6
gma03030 DNA replication 5
gma00230 Purine metabolism 4
gma00480 Glutathione metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 9
sly00240 Pyrimidine metabolism 3
sly01232 Nucleotide metabolism 3
sly03420 Nucleotide excision repair 3
sly03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 5
osa03082 ATP-dependent chromatin remodeling 3
osa00230 Purine metabolism 2
osa00240 Pyrimidine metabolism 2
osa00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 10
zma03420 Nucleotide excision repair 4
zma03430 Mismatch repair 4
zma00230 Purine metabolism 2
zma00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 4
zma03430 Mismatch repair 4
zma03410 Base excision repair 3
zma03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 8
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 5
vvi03420 Nucleotide excision repair 4
vvi00240 Pyrimidine metabolism 3
vvi01232 Nucleotide metabolism 3
vvi03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 11
ppo03420 Nucleotide excision repair 4
ppo03430 Mismatch repair 3
ppo03410 Base excision repair 3
ppo00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 8
ppo03410 Base excision repair 3
ppo03420 Nucleotide excision repair 3
ppo00240 Pyrimidine metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 9
mtr03420 Nucleotide excision repair 2
mtr03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 11
tae03410 Base excision repair 7
tae03420 Nucleotide excision repair 7
tae03430 Mismatch repair 6
tae00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 9
tae03410 Base excision repair 6
tae03420 Nucleotide excision repair 6
tae03430 Mismatch repair 6
tae00230 Purine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 6
ghi03420 Nucleotide excision repair 6
ghi03430 Mismatch repair 6
ghi03410 Base excision repair 4
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 7
ghi03420 Nucleotide excision repair 7
ghi03430 Mismatch repair 7
ghi03410 Base excision repair 4
ghi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 10
bna03420 Nucleotide excision repair 7
bna03430 Mismatch repair 7
bna03410 Base excision repair 5
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 10
bna03420 Nucleotide excision repair 7
bna03430 Mismatch repair 7
bna03410 Base excision repair 5
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 8
cre03420 Nucleotide excision repair 2
cre03430 Mismatch repair 2
cre00240 Pyrimidine metabolism 2
cre01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 9
sot03410 Base excision repair 3
sot03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 9
cit03030 DNA replication 3
cit00230 Purine metabolism 2
cit00240 Pyrimidine metabolism 2
cit00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 4
bdi03030 DNA replication 3
bdi03410 Base excision repair 2
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817506 837249 548079 100817651 544248 4331062 542357 542425 103868024 103843463 100248466 7478554 7481501 25490757 123146016 123128871 123406159 123427208 121212680 121215525 106451515 106451525 5728769 8056408 102581875 102627400 100843467 107779602 107778290
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