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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   542484   sigma-like factor 6 
 zma-r.6   542484   sigma-like factor 6 
 zma-m.5   542484   sigma-like factor 6 
 osa-u.5   4345044   RNA polymerase sigma factor sigF, chloroplastic 
 ath-u.5   SIGF   RNApolymerase sigma-subunit F 
 gma-u.5   100815699   RNA polymerase sigma factor sigF, chloroplastic 
 gma-u.5   100793539   RNA polymerase sigma factor sigF, chloroplastic 
 gma-u.5   100306289   RNA polymerase sigma factor sigF, chloroplastic 
 sly-u.5   101267154   RNA polymerase sigma factor sigF, chloroplastic 
 vvi-u.5   100267110   RNA polymerase sigma factor sigF, chloroplastic 
 ppo-u.5   18100169   RNA polymerase sigma factor sigF, chloroplastic 
 mtr-u.5   11434136   RNA polymerase sigma factor sigF, chloroplastic 
 mtr-u.5   11432370   RNA polymerase sigma factor sigF, chloroplastic 

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Top 50 coexpressed genes to 542484 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542484 (zma-u.5 coexpression data)

CoexMap"542484"


zmaLOC542484 | Entrez gene ID : 542484      
Species zma osa ath gma sly vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 3 1 1 3 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006352 [list] [network] DNA-templated transcription initiation  (96 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1994 genes)  IEA  
GO CC
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1355 genes)  IEA  
Protein NP_001105507.2 [sequence] [blastp]
XP_008644273.1 [sequence] [blastp]
XP_008644274.1 [sequence] [blastp]
XP_008644275.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  nucl 1  (predict for NP_001105507.2)
chlo 8,  nucl 1  (predict for XP_008644273.1)
chlo 8,  nucl 1  (predict for XP_008644274.1)
chlo 8,  nucl 1  (predict for XP_008644275.1)
Subcellular
localization
TargetP
chlo 9,  mito 3  (predict for NP_001105507.2)
chlo 9,  mito 3  (predict for XP_008644273.1)
chlo 9,  mito 3  (predict for XP_008644274.1)
chlo 9,  mito 3  (predict for XP_008644275.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
542484

.
zma-r.6
for
542484

.
zma-m.5
for
542484

.
osa-u.5
for
4345044

.
ath-u.5
for
SIGF

.
gma-u.5
for
100815699

.
gma-u.5
for
100793539

.
gma-u.5
for
100306289

.
sly-u.5
for
101267154

.
vvi-u.5
for
100267110

.
ppo-u.5
for
18100169

.
mtr-u.5
for
11434136

.
mtr-u.5
for
11432370

.


Ortholog ID: 7177
Species ath gma gma sly osa zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol SIGF LOC100815699 LOC100306289 LOC101267154 LOC4345044 LOC542484 LOC103865571 LOC100267110 LOC18100169 LOC11434136 LOC11432370 LOC123087460 LOC123123907 LOC123395233 LOC107899472 LOC107948374 LOC125584278 LOC106391499 LOC110431995 LOC102599838 LOC102608402 LOC100832494 LOC107807763 LOC107790542
Function* RNApolymerase sigma-subunit F RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic sigma-like factor 6 RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic-like RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00561 Glycerolipid metabolism 2
gma00566 Sulfoquinovose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 7
zma00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 3
vvi00860 Porphyrin metabolism 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 8
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00460 Cyanoamino acid metabolism 2
mtr00500 Starch and sucrose metabolism 2
mtr00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
tae00710 Carbon fixation by Calvin cycle 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 5
tae00010 Glycolysis / Gluconeogenesis 3
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
tae00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00010 Glycolysis / Gluconeogenesis 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi00860 Porphyrin metabolism 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 8
ghi00860 Porphyrin metabolism 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 2
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
bna00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
nta00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818273 100815699 100306289 101267154 4345044 542484 103865571 100267110 18100169 11434136 11432370 123087460 123123907 123395233 107899472 107948374 125584278 106391499 110431995 102599838 102608402 100832494 107807763 107790542
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