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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   542536   uncharacterized LOC542536 
 zma-r.6   542536   uncharacterized LOC542536 
 zma-m.5   542536   uncharacterized LOC542536 
 zma-u.5   542406   Zmhox1a homeobox protein 
 zma-u.5   103631611   uncharacterized LOC103631611 
 zma-u.5   732843   HOX1B protein 
 osa-u.5   4340565   homeobox protein HAZ1-like 
 ath-u.5   HAT3.1   Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein 
 gma-u.5   100811458   homeobox protein HAT3.1 
 gma-u.5   100306715   homeobox protein HAT3.1 
 sly-u.5   101247266   PHD-finger family homeodomain protein 
 vvi-u.5   100254410   homeobox protein HAT3.1 
 ppo-u.5   7469609   homeobox protein HAT3.1 
 ppo-u.5   7465051   homeobox protein HAT3.1 
 mtr-u.5   25485369   homeobox protein HAT3.1 

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Top 50 coexpressed genes to 542536 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542536 (zma-u.5 coexpression data)

CoexMap"542536"


zmaLOC542536 | Entrez gene ID : 542536    
Species zma osa ath gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 1 1 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045814 [list] [network] negative regulation of gene expression, epigenetic  (50 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3371 genes)  IEA  
GO MF
GO:0003682 [list] [network] chromatin binding  (149 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2288 genes)  IEA  
Protein NP_001338675.1 [sequence] [blastp]
XP_023156564.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  mito 2  (predict for NP_001338675.1)
nucl 7,  mito 2  (predict for XP_023156564.1)
Subcellular
localization
TargetP
mito 4,  chlo 4  (predict for NP_001338675.1)
mito 4,  chlo 4  (predict for XP_023156564.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
542536

.
zma-r.6
for
542536

.
zma-m.5
for
542536

.
zma-u.5
for
542406

.
zma-u.5
for
103631611

.
zma-u.5
for
732843

.
osa-u.5
for
4340565

.
ath-u.5
for
HAT3.1

.
gma-u.5
for
100811458

.
gma-u.5
for
100306715

.
sly-u.5
for
101247266

.
vvi-u.5
for
100254410

.
ppo-u.5
for
7469609

.
ppo-u.5
for
7465051

.
mtr-u.5
for
25485369

.


Ortholog ID: 3581
Species ath gma gma sly osa zma zma bra bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot cit bdi bdi nta nta
Symbol HAT3.1 LOC100306715 LOC100811458 LOC101247266 LOC4340565 LOC542536 LOC732843 LOC103869447 LOC103837222 LOC100254410 LOC7469609 LOC7465051 LOC25485369 LOC123063331 LOC123182651 LOC123447070 LOC123444399 LOC107908867 LOC107935031 LOC106435647 LOC125609565 CHLRE_12g492200v5 LOC8075570 LOC8067527 LOC102596310 LOC102620589 LOC100827663 LOC100833579 LOC107782980 LOC107800140
Function* Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein homeobox protein HAT3.1 homeobox protein HAT3.1 PHD-finger family homeodomain protein homeobox protein HAZ1-like uncharacterized LOC542536 HOX1B protein homeobox protein HAT3.1 homeobox protein HAT3.1 homeobox protein HAT3.1 homeobox protein HAT3.1 homeobox protein HAT3.1 homeobox protein HAT3.1 homeobox protein HOX1A homeobox protein HOX1A homeobox protein HOX1A-like homeobox protein HAZ1-like homeobox protein HAT3.1 homeobox protein HAT3.1 homeobox protein HAT3.1 homeobox protein HAT3.1-like uncharacterized protein uncharacterized LOC8075570 homeobox protein HOX1A pathogenesis-related homeodomain protein homeobox protein HAT3.1 homeobox protein HOX1A homeobox protein HAZ1 pathogenesis-related homeodomain protein pathogenesis-related homeodomain protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00220 Arginine biosynthesis 2
sly00250 Alanine, aspartate and glutamate metabolism 2
sly00710 Carbon fixation by Calvin cycle 2
sly01200 Carbon metabolism 2
sly01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03082 ATP-dependent chromatin remodeling 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 4
sbi03040 Spliceosome 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 3
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta03250 Viral life cycle - HIV-1 2
nta03015 mRNA surveillance pathway 2
nta03030 DNA replication 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821485 100306715 100811458 101247266 4340565 542536 732843 103869447 103837222 100254410 7469609 7465051 25485369 123063331 123182651 123447070 123444399 107908867 107935031 106435647 125609565 5726138 8075570 8067527 102596310 102620589 100827663 100833579 107782980 107800140
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