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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   542554   protoporphyrinogen IX oxidase (plastidic)1 
 zma-r.6   542554   protoporphyrinogen IX oxidase (plastidic)1 
 zma-m.5   542554   protoporphyrinogen IX oxidase (plastidic)1 
 osa-u.5   4327918   protoporphyrinogen oxidase, chloroplastic-like 
 ath-u.5   PPOX   Flavin containing amine oxidoreductase family 
 gma-u.5   100810190   protoporphyrinogen oxidase 1, chloroplastic 
 sly-u.5   101259974   protoporphyrinogen oxidase 
 vvi-u.5   100243415   protoporphyrinogen oxidase 1, chloroplastic 
 ppo-u.5   7486839   protoporphyrinogen oxidase 1, chloroplastic 
 ppo-u.5   7460503   protoporphyrinogen oxidase 1, chloroplastic 
 mtr-u.5   25484740   protoporphyrinogen oxidase 1, chloroplastic 

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Top 50 coexpressed genes to 542554 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542554 (zma-u.5 coexpression data)

CoexMap"542554"


zmaLOC542554 | Entrez gene ID : 542554      
Species zma osa ath gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma00860 [list] [network] Porphyrin metabolism (67 genes)
zma01240 [list] [network] Biosynthesis of cofactors (295 genes)
GO BP
GO:0006779 [list] [network] porphyrin-containing compound biosynthetic process  (37 genes)  IEA  
GO CC
GO:0009534 [list] [network] chloroplast thylakoid  (183 genes)  IEA  
GO MF
GO:0004729 [list] [network] oxygen-dependent protoporphyrinogen oxidase activity  (2 genes)  IEA  
Protein NP_001105564.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_001105564.2)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001105564.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
542554

.
zma-r.6
for
542554

.
zma-m.5
for
542554

.
osa-u.5
for
4327918

.
ath-u.5
for
PPOX

.
gma-u.5
for
100810190

.
sly-u.5
for
101259974

.
vvi-u.5
for
100243415

.
ppo-u.5
for
7486839

.
ppo-u.5
for
7460503

.
mtr-u.5
for
25484740

.


Ortholog ID: 10205
Species ath gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol PPOX LOC100810190 LOC101259974 LOC4327918 LOC542554 LOC103844594 LOC100243415 LOC7486839 LOC7460503 LOC25484740 LOC123119396 LOC123110370 LOC123397776 LOC107912235 LOC107924477 LOC106370913 LOC106400987 CHLRE_09g396300v5 LOC8078135 LOC102583969 LOC102607324 LOC100826753 LOC107780878 LOC107827378
Function* Flavin containing amine oxidoreductase family protoporphyrinogen oxidase 1, chloroplastic protoporphyrinogen oxidase protoporphyrinogen oxidase, chloroplastic-like protoporphyrinogen IX oxidase (plastidic)1 protoporphyrinogen oxidase 1, chloroplastic protoporphyrinogen oxidase 1, chloroplastic protoporphyrinogen oxidase 1, chloroplastic protoporphyrinogen oxidase 1, chloroplastic protoporphyrinogen oxidase 1, chloroplastic protoporphyrinogen oxidase, chloroplastic protoporphyrinogen oxidase, chloroplastic protoporphyrinogen oxidase, chloroplastic protoporphyrinogen oxidase 1, chloroplastic protoporphyrinogen oxidase 1, chloroplastic protoporphyrinogen oxidase 1, chloroplastic protoporphyrinogen oxidase 1, chloroplastic uncharacterized protein protoporphyrinogen oxidase, chloroplastic protoporphyrinogen oxidase, chloroplastic-like protoporphyrinogen oxidase 1, chloroplastic protoporphyrinogen oxidase, chloroplastic protoporphyrinogen oxidase, chloroplastic-like protoporphyrinogen oxidase, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 9
ath01240 Biosynthesis of cofactors 8
ath03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma00860 Porphyrin metabolism 5
gma01240 Biosynthesis of cofactors 5
gma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00860 Porphyrin metabolism 8
sly01240 Biosynthesis of cofactors 8
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 7
osa00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 6
bra00860 Porphyrin metabolism 6
bra03010 Ribosome 5
bra00061 Fatty acid biosynthesis 2
bra01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 7
vvi00860 Porphyrin metabolism 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo01240 Biosynthesis of cofactors 5
ppo00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 6
mtr00860 Porphyrin metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae00860 Porphyrin metabolism 3
tae01240 Biosynthesis of cofactors 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
tae03060 Protein export 3
tae00860 Porphyrin metabolism 3
tae01240 Biosynthesis of cofactors 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 3
hvu03018 RNA degradation 2
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00561 Glycerolipid metabolism 2
ghi03060 Protein export 2
ghi00260 Glycine, serine and threonine metabolism 2
ghi00261 Monobactam biosynthesis 2
ghi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00561 Glycerolipid metabolism 2
ghi03060 Protein export 2
ghi00260 Glycine, serine and threonine metabolism 2
ghi00261 Monobactam biosynthesis 2
ghi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
bna00860 Porphyrin metabolism 4
bna00561 Glycerolipid metabolism 2
bna00564 Glycerophospholipid metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
bna00860 Porphyrin metabolism 4
bna00561 Glycerolipid metabolism 2
bna00564 Glycerophospholipid metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00860 Porphyrin metabolism 9
cre01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 4
sbi03010 Ribosome 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00860 Porphyrin metabolism 8
sot00195 Photosynthesis 7
sot01240 Biosynthesis of cofactors 5
sot00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00860 Porphyrin metabolism 3
cit01240 Biosynthesis of cofactors 3
cit03010 Ribosome 2
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 6
nta01240 Biosynthesis of cofactors 6
nta00561 Glycerolipid metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta00565 Ether lipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 6
nta01240 Biosynthesis of cofactors 6
nta00561 Glycerolipid metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta00565 Ether lipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827991 100810190 101259974 4327918 542554 103844594 100243415 7486839 7460503 25484740 123119396 123110370 123397776 107912235 107924477 106370913 106400987 5720162 8078135 102583969 102607324 100826753 107780878 107827378
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