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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   csn5   COP9 signalosome complex subunit CSN5 
 sly-r.6   csn5   COP9 signalosome complex subunit CSN5 
 sly-m.5   csn5   COP9 signalosome complex subunit CSN5 
 sly-u.5   101256005   COP9 signalosome complex subunit 5a 
 ath-u.5   CSN5A   COP9 signalosome 5A 
 ath-u.5   CSN5B   COP9-signalosome 5B 
 gma-u.5   100784909   COP9 signalosome complex subunit 5a 
 vvi-u.5   100265887   COP9 signalosome complex subunit 5a 
 ppo-u.5   18100758   COP9 signalosome complex subunit 5a 
 ppo-u.5   7458739   COP9 signalosome complex subunit 5a 
 mtr-u.5   25500020   COP9 signalosome complex subunit 5a 
 mtr-u.5   11433036   COP9 signalosome complex subunit 5a 
 osa-u.5   4337249   COP9 signalosome complex subunit 5-like 
 zma-u.5   100283276   COP9 signalosome complex subunit 5b 

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Top 50 coexpressed genes to csn5 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to csn5 (sly-u.5 coexpression data)

CoexMap"543616"


slycsn5 | Entrez gene ID : 543616      
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 1 1 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000338 [list] [network] protein deneddylation  (8 genes)  IEA  
GO CC
GO:0008180 [list] [network] COP9 signalosome  (12 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (5127 genes)  IEA  
GO MF
GO:0019784 [list] [network] deNEDDylase activity  (3 genes)  IEA  
GO:0008237 [list] [network] metallopeptidase activity  (86 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein NP_001234331.2 [sequence] [blastp]
XP_069146803.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  chlo 1,  cyto 1,  plas 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for NP_001234331.2)
golg 3,  E.R. 2,  E.R._plas 2,  plas 1,  mito 1,  chlo 1,  nucl 1,  cyto_mito 1  (predict for XP_069146803.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for NP_001234331.2)
other 7,  chlo 3  (predict for XP_069146803.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
csn5

.
sly-r.6
for
csn5

.
sly-m.5
for
csn5

.
sly-u.5
for
101256005

.
ath-u.5
for
CSN5A

.
ath-u.5
for
CSN5B

.
gma-u.5
for
100784909

.
vvi-u.5
for
100265887

.
ppo-u.5
for
18100758

.
ppo-u.5
for
7458739

.
mtr-u.5
for
25500020

.
mtr-u.5
for
11433036

.
osa-u.5
for
4337249

.
zma-u.5
for
100283276

.


Ortholog ID: 7044
Species ath ath gma sly sly osa zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol CSN5B CSN5A LOC100784909 LOC101256005 csn5 LOC4337249 LOC100283276 LOC103840816 LOC103829303 LOC100265887 LOC18100758 LOC7458739 LOC11433036 LOC25500020 LOC123054875 LOC123047047 LOC123428089 LOC107902015 LOC107937923 LOC106429794 LOC106401214 CHLRE_09g399178v5 LOC110436531 LOC102602261 LOC102588481 LOC102629691 LOC100841802 LOC107774324 LOC107760891
Function* COP9-signalosome 5B COP9 signalosome 5A COP9 signalosome complex subunit 5a COP9 signalosome complex subunit 5a COP9 signalosome complex subunit CSN5 COP9 signalosome complex subunit 5-like COP9 signalosome complex subunit 5b COP9 signalosome complex subunit 5a COP9 signalosome complex subunit 5a COP9 signalosome complex subunit 5a COP9 signalosome complex subunit 5a COP9 signalosome complex subunit 5a COP9 signalosome complex subunit 5a COP9 signalosome complex subunit 5a COP9 signalosome complex subunit 5 COP9 signalosome complex subunit 5 COP9 signalosome complex subunit 5 COP9 signalosome complex subunit 5b COP9 signalosome complex subunit 5a COP9 signalosome complex subunit 5a COP9 signalosome complex subunit 5a uncharacterized protein COP9 signalosome complex subunit 5a-like COP9 signalosome complex subunit 5b-like COP9 signalosome complex subunit 5b-like COP9 signalosome complex subunit 5a-like COP9 signalosome complex subunit 5a COP9 signalosome complex subunit 5a COP9 signalosome complex subunit 5a-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 10
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly04141 Protein processing in endoplasmic reticulum 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 2
zma03410 Base excision repair 2
zma03420 Nucleotide excision repair 2
zma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 4
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 3
ppo03010 Ribosome 3
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03050 Proteasome 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 3
hvu04120 Ubiquitin mediated proteolysis 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 4
ghi03050 Proteasome 4
ghi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 7
ghi00020 Citrate cycle (TCA cycle) 6
ghi00640 Propanoate metabolism 5
ghi01210 2-Oxocarboxylic acid metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 7
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 7
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03082 ATP-dependent chromatin remodeling 2
sbi03083 Polycomb repressive complex 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03013 Nucleocytoplasmic transport 3
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
cit00190 Oxidative phosphorylation 2
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 10
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 11
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843463 838899 100784909 101256005 543616 4337249 100283276 103840816 103829303 100265887 18100758 7458739 11433036 25500020 123054875 123047047 123428089 107902015 107937923 106429794 106401214 5720391 110436531 102602261 102588481 102629691 100841802 107774324 107760891
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