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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   fer   bHLH transcriptional regulator 
 sly-r.6   fer   bHLH transcriptional regulator 
 sly-m.5   fer   bHLH transcriptional regulator 
 ath-u.5   FRU   FER-like regulator of iron uptake 
 gma-u.5   BHLH56   basic helix-loop-helix transcription factor 
 gma-u.5   BHLH57   bHLH transcription factor 
 gma-u.5   BHLH59   basic helix-loop-helix transcription factor bHLH59 
 mtr-u.5   11410034   transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR 
 mtr-u.5   25487443   transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR 
 osa-u.5   107276663   transcription factor BHLH156-like 
 zma-u.5   103647221   transcription factor BHLH156 
 zma-u.5   103641578   transcription factor BHLH156 

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Top 50 coexpressed genes to fer (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to fer (sly-u.5 coexpression data)

CoexMap"543705"


slyfer | Entrez gene ID : 543705      
Species sly ath gma mtr osa zma sbi nta bra cre vvi cit hvu ppo bdi sot tae bna ghi
Paralog 3 1 3 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1608 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0046983 [list] [network] protein dimerization activity  (499 genes)  IEA  
GO:0043565 [list] [network] sequence-specific DNA binding  (778 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1125 genes)  IEA  
Protein NP_001234654.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_001234654.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001234654.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
fer

.
sly-r.6
for
fer

.
sly-m.5
for
fer

.
ath-u.5
for
FRU

.
gma-u.5
for
BHLH56

.
gma-u.5
for
BHLH57

.
gma-u.5
for
BHLH59

.
mtr-u.5
for
11410034

.
mtr-u.5
for
25487443

.
osa-u.5
for
107276663

.
zma-u.5
for
103647221

.
zma-u.5
for
103641578

.


Ortholog ID: 5265
Species ath gma gma sly osa zma zma bra mtr mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol FRU BHLH56 BHLH57 fer LOC107276663 LOC103641578 LOC103647221 LOC103858298 LOC25487443 LOC11410034 LOC123185419 LOC123041329 LOC123430197 LOC107906634 LOC121217663 LOC106430488 LOC106449953 LOC8070788 LOC102601425 LOC102627494 LOC104585309 LOC107778641 LOC107820965
Function* FER-like regulator of iron uptake basic helix-loop-helix transcription factor bHLH transcription factor bHLH transcriptional regulator transcription factor BHLH156-like transcription factor BHLH156 transcription factor BHLH156 transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR transcription factor BHLH156 transcription factor BHLH156 transcription factor BHLH156-like transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma04712 Circadian rhythm - plant 2
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00270 Cysteine and methionine metabolism 2
osa00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 2
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00940 Phenylpropanoid biosynthesis 3
mtr00941 Flavonoid biosynthesis 3
mtr00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00940 Phenylpropanoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00480 Glutathione metabolism 7
sot00902 Monoterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 3
nta00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00910 Nitrogen metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817362 100805451 100787584 543705 107276663 103641578 103647221 103858298 25487443 11410034 123185419 123041329 123430197 107906634 121217663 106430488 106449953 8070788 102601425 102627494 104585309 107778641 107820965
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