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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   543715   TK1-like deoxyribonucleoside kinase 
 sly-r.6   543715   TK1-like deoxyribonucleoside kinase 
 sly-m.5   543715   TK1-like deoxyribonucleoside kinase 
 ath-u.5   TK1a   Thymidine kinase 
 ath-u.5   TK1b   Thymidine kinase 
 gma-u.5   100818437   thymidine kinase a 
 gma-u.5   100813201   thymidine kinase a 
 gma-u.5   100809756   thymidine kinase a 
 vvi-u.5   100852993   thymidine kinase 
 ppo-u.5   18106026   thymidine kinase a 
 ppo-u.5   18099758   thymidine kinase 
 mtr-u.5   112418988   thymidine kinase a 
 mtr-u.5   11436557   thymidine kinase a 
 osa-u.5   4331376   thymidine kinase-like 
 zma-u.5   100144301   thymidine kinase 

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Top 50 coexpressed genes to 543715 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 543715 (sly-u.5 coexpression data)

CoexMap"543715"


slyLOC543715 | Entrez gene ID : 543715      
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 3 1 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00240 [list] [network] Pyrimidine metabolism (66 genes)
sly01232 [list] [network] Nucleotide metabolism (84 genes)
GO BP
GO:0046104 [list] [network] thymidine metabolic process  (2 genes)  IEA  
GO CC
GO MF
GO:0004797 [list] [network] thymidine kinase activity  (2 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1916 genes)  IEA  
Protein NP_001234713.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  cyto 3,  vacu 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001234713.1)
Subcellular
localization
TargetP
chlo 4,  other 3  (predict for NP_001234713.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
543715

.
sly-r.6
for
543715

.
sly-m.5
for
543715

.
ath-u.5
for
TK1a

.
ath-u.5
for
TK1b

.
gma-u.5
for
100818437

.
gma-u.5
for
100813201

.
gma-u.5
for
100809756

.
vvi-u.5
for
100852993

.
ppo-u.5
for
18106026

.
ppo-u.5
for
18099758

.
mtr-u.5
for
112418988

.
mtr-u.5
for
11436557

.
osa-u.5
for
4331376

.
zma-u.5
for
100144301

.


Ortholog ID: 3682
Species ath ath gma gma sly osa zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi cre sbi sot sot cit bdi nta nta
Symbol TK1a TK1b LOC100818437 LOC100809756 LOC543715 LOC4331376 LOC100144301 LOC103859240 LOC103860530 LOC100852993 LOC18099758 LOC18106026 LOC11436557 LOC112418988 LOC123066683 LOC123144030 LOC123449331 LOC107922966 LOC107963718 CHLRE_03g192600v5 LOC8066225 LOC102605312 LOC102599438 LOC102614598 LOC100835449 LOC107789082 LOC107762488
Function* Thymidine kinase Thymidine kinase thymidine kinase a thymidine kinase a TK1-like deoxyribonucleoside kinase thymidine kinase-like thymidine kinase thymidine kinase a thymidine kinase b thymidine kinase thymidine kinase thymidine kinase a thymidine kinase a thymidine kinase a thymidine kinase thymidine kinase thymidine kinase-like thymidine kinase a thymidine kinase uncharacterized protein thymidine kinase thymidine kinase-like thymidine kinase-like thymidine kinase a thymidine kinase thymidine kinase-like thymidine kinase-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 5
ath03030 DNA replication 3
ath03420 Nucleotide excision repair 3
ath03410 Base excision repair 3
ath03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 4
gma00240 Pyrimidine metabolism 4
gma01232 Nucleotide metabolism 4
gma03420 Nucleotide excision repair 2
gma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00240 Pyrimidine metabolism 4
gma01232 Nucleotide metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
sly03460 Fanconi anemia pathway 2
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 13
osa01230 Biosynthesis of amino acids 4
osa00340 Histidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03440 Homologous recombination 4
bra03030 DNA replication 3
bra03460 Fanconi anemia pathway 3
bra00240 Pyrimidine metabolism 2
bra01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 5
vvi03420 Nucleotide excision repair 4
vvi00240 Pyrimidine metabolism 3
vvi01232 Nucleotide metabolism 3
vvi03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 5
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae00240 Pyrimidine metabolism 3
tae01232 Nucleotide metabolism 3
tae03008 Ribosome biogenesis in eukaryotes 3
tae03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae00240 Pyrimidine metabolism 3
tae01232 Nucleotide metabolism 3
tae03008 Ribosome biogenesis in eukaryotes 3
tae03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 7
ghi01232 Nucleotide metabolism 7
ghi00230 Purine metabolism 5
ghi00480 Glutathione metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 5
ghi00220 Arginine biosynthesis 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi00260 Glycine, serine and threonine metabolism 2
ghi00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 3
sot00240 Pyrimidine metabolism 2
sot01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00240 Pyrimidine metabolism 2
sot01232 Nucleotide metabolism 2
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00240 Pyrimidine metabolism 4
bdi01240 Biosynthesis of cofactors 3
bdi01230 Biosynthesis of amino acids 3
bdi00250 Alanine, aspartate and glutamate metabolism 2
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00240 Pyrimidine metabolism 4
nta01232 Nucleotide metabolism 4
nta03082 ATP-dependent chromatin remodeling 2
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00240 Pyrimidine metabolism 4
nta01232 Nucleotide metabolism 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819971 832371 100818437 100809756 543715 4331376 100144301 103859240 103860530 100852993 18099758 18106026 11436557 112418988 123066683 123144030 123449331 107922966 107963718 5718689 8066225 102605312 102599438 102614598 100835449 107789082 107762488
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