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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   HY5   THY5 protein 
 sly-r.6   HY5   THY5 protein 
 sly-m.5   HY5   THY5 protein 
 ath-u.5   HYH   HY5-homolog 
 ath-u.5   HY5   Basic-leucine zipper (bZIP) transcription factor family protein 
 gma-u.5   STF2   transcription factor STF2 
 gma-u.5   BZIP36   bZIP transcription factor bZIP36 
 gma-u.5   BZIP69   bZIP transcription factor bZIP69 
 vvi-u.5   100261472   transcription factor HY5-like 
 vvi-u.5   104879018   transcription factor HY5 
 ppo-u.5   7459020   transcription factor HY5 
 ppo-u.5   7471583   transcription factor HY5 
 ppo-u.5   7477210   transcription factor HY5-like 
 mtr-u.5   25490432   cellulose synthase A catalytic subunit 1 [UDP-forming] 
 mtr-u.5   11420561   transcription factor HY5-like 
 osa-u.5   4328662   transcription factor HY5 
 osa-u.5   4327123   transcription factor HY5 
 zma-u.5   100286123   uncharacterized LOC100286123 
 zma-u.5   103634871   transcription factor HY5 
 zma-u.5   103638645   transcription factor HY5 

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Top 50 coexpressed genes to HY5 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to HY5 (sly-u.5 coexpression data)

CoexMap"543733"


slyHY5 | Entrez gene ID : 543733      
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 3 2 3 2 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly04712 [list] [network] Circadian rhythm - plant (47 genes)
GO BP
GO:0010218 [list] [network] response to far red light  (1 genes)  IEA  
GO:0010114 [list] [network] response to red light  (4 genes)  IEA  
GO:0010099 [list] [network] regulation of photomorphogenesis  (5 genes)  IEA  
GO:0010017 [list] [network] red or far-red light signaling pathway  (6 genes)  IEA  
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (133 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (326 genes)  IEA  
Protein NP_001234820.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001234820.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001234820.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
HY5

.
sly-r.6
for
HY5

.
sly-m.5
for
HY5

.
ath-u.5
for
HYH

.
ath-u.5
for
HY5

.
gma-u.5
for
STF2

.
gma-u.5
for
BZIP36

.
gma-u.5
for
BZIP69

.
vvi-u.5
for
100261472

.
vvi-u.5
for
104879018

.
ppo-u.5
for
7459020

.
ppo-u.5
for
7471583

.
ppo-u.5
for
7477210

.
mtr-u.5
for
25490432

.
mtr-u.5
for
11420561

.
osa-u.5
for
4328662

.
osa-u.5
for
4327123

.
zma-u.5
for
100286123

.
zma-u.5
for
103634871

.
zma-u.5
for
103638645

.


Ortholog ID: 2407
Species ath ath gma gma sly osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae hvu hvu ghi ghi bna bna cre sbi sbi sot bdi bdi nta nta
Symbol HY5 HYH BZIP69 BZIP36 HY5 LOC4327123 LOC103638645 LOC100286123 LOC103859717 LOC103850763 LOC100261472 LOC104879018 LOC7459020 LOC7477210 LOC25490432 LOC11420561 LOC123060540 LOC123402759 LOC123413561 LOC107909196 LOC121219986 LOC106391328 LOC125609007 CHLRE_06g310500v5 LOC8082252 LOC8078473 LOC102588526 LOC100839215 LOC100836913 LOC142179585 LOC107776843
Function* Basic-leucine zipper (bZIP) transcription factor family protein HY5-homolog bZIP transcription factor bZIP69 bZIP transcription factor bZIP36 THY5 protein transcription factor HY5 transcription factor HY5 uncharacterized LOC100286123 transcription factor HY5-like transcription factor HY5 transcription factor HY5-like transcription factor HY5 transcription factor HY5 transcription factor HY5-like cellulose synthase A catalytic subunit 1 [UDP-forming] transcription factor HY5-like transcription factor HY5 transcription factor HY5-like transcription factor HY5 transcription factor HY5 transcription factor HY5 transcription factor HY5 transcription factor HY5-like uncharacterized protein transcription factor HY5 transcription factor HY5 transcription factor HY5 transcription factor HY5 transcription factor HY5 transcription factor HY5-like transcription factor HY5
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
ath04712 Circadian rhythm - plant 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 3
ath00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00230 Purine metabolism 2
gma00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 4
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00710 Carbon fixation by Calvin cycle 2
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 3
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 2
mtr00500 Starch and sucrose metabolism 2
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
mtr00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
tae04120 Ubiquitin mediated proteolysis 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00941 Flavonoid biosynthesis 4
hvu04712 Circadian rhythm - plant 3
hvu00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00760 Nicotinate and nicotinamide metabolism 4
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04712 Circadian rhythm - plant 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00760 Nicotinate and nicotinamide metabolism 4
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04712 Circadian rhythm - plant 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna04712 Circadian rhythm - plant 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 8
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 3
sbi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
sot04712 Circadian rhythm - plant 2
sot00940 Phenylpropanoid biosynthesis 2
sot00941 Flavonoid biosynthesis 2
sot00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00010 Glycolysis / Gluconeogenesis 2
bdi01200 Carbon metabolism 2
bdi01230 Biosynthesis of amino acids 2
bdi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00941 Flavonoid biosynthesis 4
bdi04712 Circadian rhythm - plant 2
bdi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830996 821027 778143 548004 543733 4327123 103638645 100286123 103859717 103850763 100261472 104879018 7459020 7477210 25490432 11420561 123060540 123402759 123413561 107909196 121219986 106391328 125609007 5716798 8082252 8078473 102588526 100839215 100836913 142179585 107776843
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