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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   kdsA   3-desoxy-D-manno octulosonic acid-8-phosphate synthase 
 sly-r.6   kdsA   3-desoxy-D-manno octulosonic acid-8-phosphate synthase 
 sly-m.5   kdsA   3-desoxy-D-manno octulosonic acid-8-phosphate synthase 
 ath-u.5   ATKDSA2   Aldolase superfamily protein 
 ath-u.5   AtkdsA1   Aldolase-type TIM barrel family protein 
 gma-u.5   100810842   2-dehydro-3-deoxyphosphooctonate aldolase-like protein 
 gma-u.5   100809120   2-dehydro-3-deoxyphosphooctonate aldolase 
 vvi-u.5   100255394   2-dehydro-3-deoxyphosphooctonate aldolase 
 ppo-u.5   7468748   2-dehydro-3-deoxyphosphooctonate aldolase 
 ppo-u.5   7492498   2-dehydro-3-deoxyphosphooctonate aldolase 
 mtr-u.5   11437185   2-dehydro-3-deoxyphosphooctonate aldolase 
 osa-u.5   4351779   2-dehydro-3-deoxyphosphooctonate aldolase 1 
 zma-u.5   100191165   2-dehydro-3-deoxyphosphooctonate aldolase 

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Top 50 coexpressed genes to kdsA (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to kdsA (sly-u.5 coexpression data)

CoexMap"543766"


slykdsA | Entrez gene ID : 543766      
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 2 2 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00541 [list] [network] Biosynthesis of various nucleotide sugars (26 genes)
sly01250 [list] [network] Biosynthesis of nucleotide sugars (106 genes)
GO BP
GO:0046364 [list] [network] monosaccharide biosynthetic process  (19 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (916 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (5127 genes)  IEA  
GO MF
GO:0008676 [list] [network] 3-deoxy-8-phosphooctulonate synthase activity  (1 genes)  IEA  
Protein NP_001233887.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 2,  nucl 1  (predict for NP_001233887.2)
Subcellular
localization
TargetP
scret 7,  other 3  (predict for NP_001233887.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
kdsA

.
sly-r.6
for
kdsA

.
sly-m.5
for
kdsA

.
ath-u.5
for
ATKDSA2

.
ath-u.5
for
AtkdsA1

.
gma-u.5
for
100810842

.
gma-u.5
for
100809120

.
vvi-u.5
for
100255394

.
ppo-u.5
for
7468748

.
ppo-u.5
for
7492498

.
mtr-u.5
for
11437185

.
osa-u.5
for
4351779

.
zma-u.5
for
100191165

.


Ortholog ID: 8237
Species ath ath gma gma sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AtkdsA1 ATKDSA2 LOC100810842 LOC100809120 kdsA LOC4351779 LOC100191165 LOC103853194 LOC103830480 LOC100255394 LOC7492498 LOC7468748 LOC11437185 LOC123187424 LOC123051502 LOC123424673 LOC107919019 LOC107913976 LOC125597827 LOC106381509 LOC110429722 LOC102602925 LOC102607815 LOC100832198 LOC107762726 LOC107822777
Function* Aldolase-type TIM barrel family protein Aldolase superfamily protein 2-dehydro-3-deoxyphosphooctonate aldolase-like protein 2-dehydro-3-deoxyphosphooctonate aldolase 3-desoxy-D-manno octulosonic acid-8-phosphate synthase 2-dehydro-3-deoxyphosphooctonate aldolase 1 2-dehydro-3-deoxyphosphooctonate aldolase 2-dehydro-3-deoxyphosphooctonate aldolase 1 2-dehydro-3-deoxyphosphooctonate aldolase 1 2-dehydro-3-deoxyphosphooctonate aldolase 2-dehydro-3-deoxyphosphooctonate aldolase 2-dehydro-3-deoxyphosphooctonate aldolase 2-dehydro-3-deoxyphosphooctonate aldolase 2-dehydro-3-deoxyphosphooctonate aldolase 2-dehydro-3-deoxyphosphooctonate aldolase 2-dehydro-3-deoxyphosphooctonate aldolase 2-dehydro-3-deoxyphosphooctonate aldolase 2-dehydro-3-deoxyphosphooctonate aldolase 2-dehydro-3-deoxyphosphooctonate aldolase 1-like 2-dehydro-3-deoxyphosphooctonate aldolase 1 2-dehydro-3-deoxyphosphooctonate aldolase 2-dehydro-3-deoxyphosphooctonate aldolase 1 2-dehydro-3-deoxyphosphooctonate aldolase 2-dehydro-3-deoxyphosphooctonate aldolase 2-dehydro-3-deoxyphosphooctonate aldolase 1 2-dehydro-3-deoxyphosphooctonate aldolase 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01250 Biosynthesis of nucleotide sugars 4
ath00541 Biosynthesis of various nucleotide sugars 3
ath00561 Glycerolipid metabolism 2
ath01232 Nucleotide metabolism 2
ath00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00541 Biosynthesis of various nucleotide sugars 3
ath01250 Biosynthesis of nucleotide sugars 3
ath00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00541 Biosynthesis of various nucleotide sugars 2
gma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00010 Glycolysis / Gluconeogenesis 2
gma00541 Biosynthesis of various nucleotide sugars 2
gma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00061 Fatty acid biosynthesis 5
sly01212 Fatty acid metabolism 5
sly01240 Biosynthesis of cofactors 5
sly01200 Carbon metabolism 3
sly00780 Biotin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 8
osa00300 Lysine biosynthesis 5
osa00220 Arginine biosynthesis 3
osa00250 Alanine, aspartate and glutamate metabolism 3
osa01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 3
zma03010 Ribosome 2
zma04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01250 Biosynthesis of nucleotide sugars 3
bra00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 2
bra04814 Motor proteins 2
bra00541 Biosynthesis of various nucleotide sugars 2
bra01250 Biosynthesis of nucleotide sugars 2
bra04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00541 Biosynthesis of various nucleotide sugars 2
vvi01250 Biosynthesis of nucleotide sugars 2
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01250 Biosynthesis of nucleotide sugars 4
ppo00541 Biosynthesis of various nucleotide sugars 3
ppo00010 Glycolysis / Gluconeogenesis 2
ppo00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01250 Biosynthesis of nucleotide sugars 3
ppo01200 Carbon metabolism 3
ppo00010 Glycolysis / Gluconeogenesis 3
ppo01230 Biosynthesis of amino acids 3
ppo00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 4
mtr00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00020 Citrate cycle (TCA cycle) 6
tae00270 Cysteine and methionine metabolism 4
tae01200 Carbon metabolism 4
tae00566 Sulfoquinovose metabolism 3
tae00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00020 Citrate cycle (TCA cycle) 8
tae00541 Biosynthesis of various nucleotide sugars 4
tae00270 Cysteine and methionine metabolism 3
tae00566 Sulfoquinovose metabolism 3
tae00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi00541 Biosynthesis of various nucleotide sugars 2
ghi01250 Biosynthesis of nucleotide sugars 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi00541 Biosynthesis of various nucleotide sugars 2
ghi01250 Biosynthesis of nucleotide sugars 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00541 Biosynthesis of various nucleotide sugars 4
bna01250 Biosynthesis of nucleotide sugars 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00541 Biosynthesis of various nucleotide sugars 4
bna01250 Biosynthesis of nucleotide sugars 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 4
sbi00061 Fatty acid biosynthesis 3
sbi00541 Biosynthesis of various nucleotide sugars 2
sbi00010 Glycolysis / Gluconeogenesis 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 3
sot00300 Lysine biosynthesis 2
sot00010 Glycolysis / Gluconeogenesis 2
sot00020 Citrate cycle (TCA cycle) 2
sot00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
nta00541 Biosynthesis of various nucleotide sugars 2
nta01250 Biosynthesis of nucleotide sugars 2
nta03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 3
nta00541 Biosynthesis of various nucleotide sugars 2
nta01250 Biosynthesis of nucleotide sugars 2
nta00073 Cutin, suberine and wax biosynthesis 2
nta00561 Glycerolipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844288 838203 100810842 100809120 543766 4351779 100191165 103853194 103830480 100255394 7492498 7468748 11437185 123187424 123051502 123424673 107919019 107913976 125597827 106381509 110429722 102602925 102607815 100832198 107762726 107822777
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