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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   TM29   developmental protein SEPALLATA 1-like 
 sly-r.6   TM29   developmental protein SEPALLATA 1-like 
 sly-u.5   MADS1   MADS-box protein 1 
 sly-u.5   543885   MADS-box protein 5 
 ath-u.5   SEP2   K-box region and MADS-box transcription factor family protein 
 ath-u.5   SEP3   K-box region and MADS-box transcription factor family protein 
 ath-u.5   SEP1   K-box region and MADS-box transcription factor family protein 
 gma-u.5   100788427   agamous-like MADS-box protein MADS2 
 gma-u.5   100778931   agamous-like MADS-box protein MADS4 
 gma-u.5   100785322   agamous-like MADS-box protein MADS2 
 vvi-u.5   MADS2   MADS-box protein 2 
 vvi-u.5   MADS4   MADS-box protein 4 
 vvi-u.5   100232936   agamous-like MADS-box protein MADS2 
 osa-u.5   4347517   MADS-box transcription factor 8-like 
 osa-u.5   4346134   MADS-box transcription factor 7-like 
 zma-u.5   542506   MADS27 
 zma-u.5   100415938   uncharacterized LOC100415938 

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Top 50 coexpressed genes to TM29 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TM29 (sly-u.5 coexpression data)

CoexMap"543770"


slyTM29 | Entrez gene ID : 543770      
Species sly ath gma vvi osa zma sbi nta mtr cre bra cit hvu ppo bdi sot tae bna ghi
Paralog 4 3 3 3 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (133 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (282 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (326 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (499 genes)  IEA  
Protein NP_001233911.1 [sequence] [blastp]
XP_010315869.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001233911.1)
nucl 10  (predict for XP_010315869.1)
Subcellular
localization
TargetP
other 8,  mito 5  (predict for NP_001233911.1)
other 8,  mito 5  (predict for XP_010315869.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
TM29

.
sly-r.6
for
TM29

.
sly-u.5
for
MADS1

.
sly-u.5
for
543885

.
ath-u.5
for
SEP2

.
ath-u.5
for
SEP3

.
ath-u.5
for
SEP1

.
gma-u.5
for
100788427

.
gma-u.5
for
100778931

.
gma-u.5
for
100785322

.
vvi-u.5
for
MADS2

.
vvi-u.5
for
MADS4

.
vvi-u.5
for
100232936

.
osa-u.5
for
4347517

.
osa-u.5
for
4346134

.
zma-u.5
for
542506

.
zma-u.5
for
100415938

.


Ortholog ID: 747
Species ath ath gma gma sly osa osa zma zma bra bra vvi vvi tae tae ghi ghi bna bna sbi sbi cit cit bdi bdi nta nta
Symbol SEP3 SEP2 LOC100811049 LOC100794429 TM29 LOC4346134 LOC4347517 LOC542506 LOC542043 LOC103835412 LOC103856162 LOC100251943 MADS2 LOC100137001 LOC123104312 LOC107886377 LOC107893809 LOC106382868 LOC125580827 LOC8058971 LOC8060611 LOC102611482 LOC102618932 LOC100844294 LOC100843405 LOC107820803 LOC107773468
Function* K-box region and MADS-box transcription factor family protein K-box region and MADS-box transcription factor family protein agamous-like MADS-box protein MADS2 agamous-like MADS-box protein MADS4 developmental protein SEPALLATA 1-like MADS-box transcription factor 7-like MADS-box transcription factor 8-like MADS27 MADS6 agamous-like MADS-box protein AGL9 homolog developmental protein SEPALLATA 1 agamous-like MADS-box protein MADS2 MADS-box protein 2 MADS-box transcription factor 8 MADS-box transcription factor 8 agamous-like MADS-box protein AGL9 homolog agamous-like MADS-box protein MADS2 developmental protein SEPALLATA 2 developmental protein SEPALLATA 2-like MADS-box transcription factor 8 MADS-box transcription factor 7 agamous-like MADS-box protein MADS2 agamous-like MADS-box protein AGL9 homolog MADS-box transcription factor 7-like MADS-box transcription factor 8 MADS-box protein 04g005320 agamous-like MADS-box protein AGL9 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
bra00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00620 Pyruvate metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 3
vvi04082 Neuroactive ligand signaling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04626 Plant-pathogen interaction 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
bdi00100 Steroid biosynthesis 2
bdi00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04820 Cytoskeleton in muscle cells 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839040 821151 100811049 100794429 543770 4346134 4347517 542506 542043 103835412 103856162 100251943 100232867 100137001 123104312 107886377 107893809 106382868 125580827 8058971 8060611 102611482 102618932 100844294 100843405 107820803 107773468
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