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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   543993   methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial 
 sly-r.6   543993   methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial 
 sly-m.5   543993   methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial 
 ath-u.5   MCCA   methylcrotonyl-CoA carboxylase alpha chain 
 gma-u.5   MCCA   3-methylcrotonyl-CoA carboxylase 1 
 gma-u.5   100804850   methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial 
 vvi-u.5   100853875   methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial 
 ppo-u.5   7464698   methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial 
 mtr-u.5   11431272   methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial 
 osa-u.5   4352741   methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial-like 
 zma-u.5   100280665   methylcrotonoyl-CoA carboxylase subunit alpha 

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Top 50 coexpressed genes to 543993 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 543993 (sly-u.5 coexpression data)

CoexMap"543993"


slyLOC543993 | Entrez gene ID : 543993      
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00280 [list] [network] Valine, leucine and isoleucine degradation (67 genes)
GO BP
GO CC
GO:0005739 [list] [network] mitochondrion  (608 genes)  IEA  
GO MF
GO:0004485 [list] [network] methylcrotonoyl-CoA carboxylase activity  (2 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1916 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (2359 genes)  IEA  
Protein NP_001296112.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  chlo 2,  plas 1  (predict for NP_001296112.1)
Subcellular
localization
TargetP
mito 3  (predict for NP_001296112.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
543993

.
sly-r.6
for
543993

.
sly-m.5
for
543993

.
ath-u.5
for
MCCA

.
gma-u.5
for
MCCA

.
gma-u.5
for
100804850

.
vvi-u.5
for
100853875

.
ppo-u.5
for
7464698

.
mtr-u.5
for
11431272

.
osa-u.5
for
4352741

.
zma-u.5
for
100280665

.


Ortholog ID: 10462
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol MCCA LOC100804850 MCCA LOC543993 LOC4352741 LOC100280665 LOC103843706 LOC100853875 LOC7464698 LOC11431272 LOC123102270 LOC123110466 LOC123395941 LOC107951384 LOC107914801 LOC106369280 LOC106405765 CHLRE_06g278098v5 LOC8076667 LOC102596438 LOC102627082 LOC100828042 LOC107796067 LOC107782261
Function* methylcrotonyl-CoA carboxylase alpha chain methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial 3-methylcrotonyl-CoA carboxylase 1 methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial-like methylcrotonoyl-CoA carboxylase subunit alpha methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial uncharacterized protein methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00280 Valine, leucine and isoleucine degradation 7
ath01210 2-Oxocarboxylic acid metabolism 4
ath00640 Propanoate metabolism 3
ath01200 Carbon metabolism 3
ath00250 Alanine, aspartate and glutamate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00280 Valine, leucine and isoleucine degradation 10
gma00640 Propanoate metabolism 4
gma00071 Fatty acid degradation 3
gma01212 Fatty acid metabolism 3
gma04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00280 Valine, leucine and isoleucine degradation 11
gma00640 Propanoate metabolism 5
gma04146 Peroxisome 3
gma00785 Lipoic acid metabolism 3
gma01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00280 Valine, leucine and isoleucine degradation 5
sly00330 Arginine and proline metabolism 3
sly00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00280 Valine, leucine and isoleucine degradation 10
osa00640 Propanoate metabolism 5
osa00410 beta-Alanine metabolism 3
osa00785 Lipoic acid metabolism 3
osa01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00280 Valine, leucine and isoleucine degradation 7
zma00640 Propanoate metabolism 3
zma00785 Lipoic acid metabolism 3
zma01210 2-Oxocarboxylic acid metabolism 3
zma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00280 Valine, leucine and isoleucine degradation 7
bra00640 Propanoate metabolism 4
bra01210 2-Oxocarboxylic acid metabolism 4
bra01200 Carbon metabolism 4
bra00410 beta-Alanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00280 Valine, leucine and isoleucine degradation 4
vvi00640 Propanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00280 Valine, leucine and isoleucine degradation 4
ppo00520 Amino sugar and nucleotide sugar metabolism 2
ppo01250 Biosynthesis of nucleotide sugars 2
ppo00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00280 Valine, leucine and isoleucine degradation 6
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr00310 Lysine degradation 2
mtr00270 Cysteine and methionine metabolism 2
mtr01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00280 Valine, leucine and isoleucine degradation 12
tae00910 Nitrogen metabolism 3
tae00640 Propanoate metabolism 2
tae00785 Lipoic acid metabolism 2
tae01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00280 Valine, leucine and isoleucine degradation 14
tae04146 Peroxisome 4
tae01210 2-Oxocarboxylic acid metabolism 4
tae00650 Butanoate metabolism 3
tae00640 Propanoate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00280 Valine, leucine and isoleucine degradation 8
hvu00640 Propanoate metabolism 5
hvu00410 beta-Alanine metabolism 3
hvu01200 Carbon metabolism 3
hvu00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 5
ghi00330 Arginine and proline metabolism 3
ghi00640 Propanoate metabolism 3
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 5
ghi00330 Arginine and proline metabolism 3
ghi00640 Propanoate metabolism 3
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00280 Valine, leucine and isoleucine degradation 14
bna00640 Propanoate metabolism 8
bna00785 Lipoic acid metabolism 4
bna01210 2-Oxocarboxylic acid metabolism 4
bna00410 beta-Alanine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00280 Valine, leucine and isoleucine degradation 12
bna00640 Propanoate metabolism 6
bna00785 Lipoic acid metabolism 4
bna01210 2-Oxocarboxylic acid metabolism 4
bna00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00280 Valine, leucine and isoleucine degradation 3
cre00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00280 Valine, leucine and isoleucine degradation 6
sbi01210 2-Oxocarboxylic acid metabolism 3
sbi00640 Propanoate metabolism 2
sbi00785 Lipoic acid metabolism 2
sbi00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00280 Valine, leucine and isoleucine degradation 4
sot00310 Lysine degradation 3
sot00260 Glycine, serine and threonine metabolism 2
sot00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00280 Valine, leucine and isoleucine degradation 8
bdi00640 Propanoate metabolism 4
bdi00785 Lipoic acid metabolism 3
bdi01210 2-Oxocarboxylic acid metabolism 3
bdi00520 Amino sugar and nucleotide sugar metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00280 Valine, leucine and isoleucine degradation 9
nta00270 Cysteine and methionine metabolism 7
nta01210 2-Oxocarboxylic acid metabolism 7
nta00250 Alanine, aspartate and glutamate metabolism 6
nta01200 Carbon metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00280 Valine, leucine and isoleucine degradation 6
nta00520 Amino sugar and nucleotide sugar metabolism 4
nta01250 Biosynthesis of nucleotide sugars 4
nta00250 Alanine, aspartate and glutamate metabolism 4
nta00270 Cysteine and methionine metabolism 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838362 100804850 548094 543993 4352741 100280665 103843706 100853875 7464698 11431272 123102270 123110466 123395941 107951384 107914801 106369280 106405765 5723671 8076667 102596438 102627082 100828042 107796067 107782261
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