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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   CS1   chorismate synthase 1 
 sly-r.6   CS1   chorismate synthase 1 
 sly-m.5   CS1   chorismate synthase 1 
 sly-u.5   CS2   chorismate synthase 2 
 ath-u.5   EMB1144   chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase 
 gma-u.5   732570   chorismate synthase 
 gma-u.5   100814518   chorismate synthase, chloroplastic 
 vvi-u.5   100241015   chorismate synthase 1, chloroplastic 
 ppo-u.5   7457872   chorismate synthase, chloroplastic 
 ppo-u.5   7468413   chorismate synthase, chloroplastic 
 mtr-u.5   11417820   chorismate synthase 1, chloroplastic 
 osa-u.5   4332286   chorismate synthase 2, chloroplastic 
 zma-u.5   100282199   chorismate synthase 2 
 zma-u.5   100272984   Chorismate synthase chloroplastic 

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Top 50 coexpressed genes to CS1 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CS1 (sly-u.5 coexpression data)

CoexMap"544154"


slyCS1 | Entrez gene ID : 544154      
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 4 1 2 1 2 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (49 genes)
sly01230 [list] [network] Biosynthesis of amino acids (226 genes)
GO BP
GO:0009423 [list] [network] chorismate biosynthetic process  (7 genes)  IEA  
GO:0009073 [list] [network] aromatic amino acid family biosynthetic process  (42 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (916 genes)  IEA  
GO MF
GO:0004107 [list] [network] chorismate synthase activity  (2 genes)  IEA  
GO:0010181 [list] [network] FMN binding  (32 genes)  IEA  
Protein NP_001234422.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  vacu 2  (predict for NP_001234422.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001234422.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
CS1

.
sly-r.6
for
CS1

.
sly-m.5
for
CS1

.
sly-u.5
for
CS2

.
ath-u.5
for
EMB1144

.
gma-u.5
for
732570

.
gma-u.5
for
100814518

.
vvi-u.5
for
100241015

.
ppo-u.5
for
7457872

.
ppo-u.5
for
7468413

.
mtr-u.5
for
11417820

.
osa-u.5
for
4332286

.
zma-u.5
for
100282199

.
zma-u.5
for
100272984

.


Ortholog ID: 5631
Species ath gma gma sly sly osa zma zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol EMB1144 LOC732570 LOC100814518 CS2 CS1 LOC4332286 LOC100282199 LOC100272984 LOC103832977 LOC103868667 LOC100241015 LOC7457872 LOC7468413 LOC11417820 LOC123085316 LOC123098022 LOC123449125 LOC107904083 LOC107957386 LOC111215631 LOC106431065 CHLRE_03g145747v5 LOC8054323 LOC102589491 LOC102580455 LOC102627582 LOC100832184 LOC107769690 LOC107790266
Function* chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase chorismate synthase chorismate synthase, chloroplastic chorismate synthase 2 chorismate synthase 1 chorismate synthase 2, chloroplastic chorismate synthase 2 Chorismate synthase chloroplastic chorismate synthase, chloroplastic chorismate synthase, chloroplastic chorismate synthase 1, chloroplastic chorismate synthase, chloroplastic chorismate synthase, chloroplastic chorismate synthase 1, chloroplastic chorismate synthase 2, chloroplastic chorismate synthase 2, chloroplastic chorismate synthase 2, chloroplastic chorismate synthase, chloroplastic chorismate synthase, chloroplastic chorismate synthase, chloroplastic-like chorismate synthase, chloroplastic uncharacterized protein chorismate synthase 2, chloroplastic chorismate synthase 1, chloroplastic chorismate synthase 2, chloroplastic chorismate synthase, chloroplastic chorismate synthase 2, chloroplastic chorismate synthase 1, chloroplastic chorismate synthase 1, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 8
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ath00030 Pentose phosphate pathway 4
ath01200 Carbon metabolism 4
ath00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 12
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
gma00010 Glycolysis / Gluconeogenesis 3
gma00350 Tyrosine metabolism 3
gma00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 9
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
gma00350 Tyrosine metabolism 4
gma00360 Phenylalanine metabolism 3
gma00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
sly01230 Biosynthesis of amino acids 8
sly01200 Carbon metabolism 3
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 10
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
osa01200 Carbon metabolism 2
osa00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
osa00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 11
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
zma01200 Carbon metabolism 6
zma00999 Biosynthesis of various plant secondary metabolites 2
zma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma02010 ABC transporters 3
zma00073 Cutin, suberine and wax biosynthesis 2
zma04146 Peroxisome 2
zma00062 Fatty acid elongation 2
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 12
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 11
bra00999 Biosynthesis of various plant secondary metabolites 2
bra00350 Tyrosine metabolism 2
bra00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 14
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 11
bra00999 Biosynthesis of various plant secondary metabolites 4
bra01240 Biosynthesis of cofactors 3
bra00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
vvi01230 Biosynthesis of amino acids 8
vvi00280 Valine, leucine and isoleucine degradation 2
vvi00350 Tyrosine metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 8
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ppo00071 Fatty acid degradation 2
ppo00350 Tyrosine metabolism 2
ppo00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 9
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
ppo00071 Fatty acid degradation 3
ppo00010 Glycolysis / Gluconeogenesis 2
ppo00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
mtr01230 Biosynthesis of amino acids 4
mtr00020 Citrate cycle (TCA cycle) 3
mtr00900 Terpenoid backbone biosynthesis 2
mtr00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 13
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00910 Nitrogen metabolism 3
tae00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 15
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 13
tae00220 Arginine biosynthesis 2
tae01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 10
hvu00270 Cysteine and methionine metabolism 6
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
hvu00670 One carbon pool by folate 4
hvu01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 8
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
ghi00030 Pentose phosphate pathway 2
ghi00040 Pentose and glucuronate interconversions 2
ghi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 11
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
ghi00350 Tyrosine metabolism 3
ghi00360 Phenylalanine metabolism 3
ghi00950 Isoquinoline alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
bna01230 Biosynthesis of amino acids 9
bna00010 Glycolysis / Gluconeogenesis 2
bna00071 Fatty acid degradation 2
bna00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 11
bna01230 Biosynthesis of amino acids 11
bna00010 Glycolysis / Gluconeogenesis 2
bna00071 Fatty acid degradation 2
bna00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 3
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 11
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
sbi01200 Carbon metabolism 3
sbi00350 Tyrosine metabolism 3
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 10
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
sot00999 Biosynthesis of various plant secondary metabolites 2
sot00230 Purine metabolism 2
sot00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 5
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
cit01230 Biosynthesis of amino acids 4
cit00020 Citrate cycle (TCA cycle) 3
cit00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 11
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
bdi01200 Carbon metabolism 5
bdi00541 Biosynthesis of various nucleotide sugars 2
bdi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 10
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
nta00350 Tyrosine metabolism 2
nta00360 Phenylalanine metabolism 2
nta00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
nta01230 Biosynthesis of amino acids 8
nta00270 Cysteine and methionine metabolism 4
nta00480 Glutathione metabolism 2
nta00999 Biosynthesis of various plant secondary metabolites 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841307 732570 100814518 544151 544154 4332286 100282199 100272984 103832977 103868667 100241015 7457872 7468413 11417820 123085316 123098022 123449125 107904083 107957386 111215631 106431065 5721248 8054323 102589491 102580455 102627582 100832184 107769690 107790266
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