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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   547740   cyclin d3 
 gma-r.7   547740   cyclin d3 
 gma-m.5   547740   cyclin d3 
 gma-u.5   100811122   cyclin-D3-1 
 gma-u.5   100812660   cyclin-D4-1 
 mtr-u.5   11446144   cyclin-D4-2 
 mtr-u.5   11405645   cyclin-D1-1 
 ppo-u.5   7472682   cyclin-D3-1 
 ppo-u.5   7476401   cyclin-D3-3 
 ath-u.5   CYCD3;3   CYCLIN D3;3 
 ath-u.5   CYCD3;2   CYCLIN D3;2 
 ath-u.5   CYCD4;1   CYCLIN D4;1 
 vvi-u.5   100251483   cyclin-D2-1 
 vvi-u.5   100854424   cyclin-D5-1 
 sly-u.5   cycd3c2   D-type cyclin-2 
 sly-u.5   cycd3c3   D-type cyclin-3 
 sly-u.5   cycD3   cyclin D3.1 
 osa-u.5   9272445   cyclin-D1-2 
 osa-u.5   4331985   cyclin-D5-3-like 
 zma-u.5   100283538   cyclin delta-2 
 zma-u.5   100285876   cyclin delta-2 

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Top 50 coexpressed genes to 547740 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 547740 (gma-u.5 coexpression data)

CoexMap"547740"


gmaLOC547740 | Entrez gene ID : 547740      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 5 2 2 3 2 3 2 2 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx04075 [list] [network] Plant hormone signal transduction (888 genes)
GO BP
GO:0044772 [list] [network] mitotic cell cycle phase transition  (92 genes)  IEA  
GO:0000079 [list] [network] regulation of cyclin-dependent protein serine/threonine kinase activity  (102 genes)  IEA  
GO CC
GO:0000307 [list] [network] cyclin-dependent protein kinase holoenzyme complex  (157 genes)  IEA  
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0016538 [list] [network] cyclin-dependent protein serine/threonine kinase regulator activity  (100 genes)  IEA  
Protein NP_001237151.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cysk 1,  chlo 1,  cyto 1,  cysk_plas 1  (predict for NP_001237151.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001237151.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
547740

.
gma-r.7
for
547740

.
gma-m.5
for
547740

.
gma-u.5
for
100811122

.
gma-u.5
for
100812660

.
mtr-u.5
for
11446144

.
mtr-u.5
for
11405645

.
ppo-u.5
for
7472682

.
ppo-u.5
for
7476401

.
ath-u.5
for
CYCD3;3

.
ath-u.5
for
CYCD3;2

.
ath-u.5
for
CYCD4;1

.
vvi-u.5
for
100251483

.
vvi-u.5
for
100854424

.
sly-u.5
for
cycd3c2

.
sly-u.5
for
cycd3c3

.
sly-u.5
for
cycD3

.
osa-u.5
for
9272445

.
osa-u.5
for
4331985

.
zma-u.5
for
100283538

.
zma-u.5
for
100285876

.


Ortholog ID: 67
Species ath ath gma gma sly osa zma zma bra bra vvi vvi ppo ppo mtr tae hvu hvu ghi ghi bna bna cre cre sbi sot cit cit bdi bdi nta nta
Symbol CYCD4;1 CYCD1;1 LOC100804102 LOC100807175 LOC101248769 LOC4340499 LOC100273934 LOC103647502 LOC103829523 LOC103862565 LOC100247298 LOC100255261 LOC18104838 LOC7490056 LOC11433995 LOC123052052 LOC123451148 LOC123398931 LOC107899915 LOC107932943 LOC106417667 LOC106402828 CHLRE_11g467772v5 CHLRE_06g284350v5 LOC8078902 LOC102583812 LOC102606606 LOC102630732 LOC100832008 LOC100841255 LOC107782163 LOC107776537
Function* CYCLIN D4;1 CYCLIN D1;1 cyclin-D3-1-like cyclin-D3-3 cyclin-D2-1 cyclin-D3-1-like uncharacterized LOC100273934 cyclin-D4-1 cyclin-D3-2 cyclin-D5-1 cyclin-D4-2 cyclin-D1-1 cyclin-D3-1 cyclin-D3-1 cyclin-D5-1 cyclin-D2-2 cyclin-D5-1-like cyclin-D4-1-like cyclin-D4-2 cyclin-D3-3 cyclin-D4-1-like cyclin-D3-3 uncharacterized protein uncharacterized protein cyclin-D3-1 cyclin-D3-3-like cyclin-D5-1 cyclin-D4-1-like cyclin-D5-3 cyclin-D4-2 cyclin-D3-2 cyclin-D4-1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 6
ath03420 Nucleotide excision repair 3
ath03430 Mismatch repair 3
ath03440 Homologous recombination 3
ath03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00010 Glycolysis / Gluconeogenesis 2
bra00500 Starch and sucrose metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00010 Glycolysis / Gluconeogenesis 2
vvi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00944 Flavone and flavonol biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna00270 Cysteine and methionine metabolism 2
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 8
sbi03030 DNA replication 5
sbi04145 Phagosome 3
sbi03060 Protein export 3
sbi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 7
sot04075 Plant hormone signal transduction 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00100 Steroid biosynthesis 5
nta04145 Phagosome 4
nta04517 IgSF CAM signaling 4
nta04814 Motor proteins 4
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00053 Ascorbate and aldarate metabolism 3
nta00520 Amino sugar and nucleotide sugar metabolism 3
nta01240 Biosynthesis of cofactors 3
nta01250 Biosynthesis of nucleotide sugars 3
nta00240 Pyrimidine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836667 843357 100804102 100807175 101248769 4340499 100273934 103647502 103829523 103862565 100247298 100255261 18104838 7490056 11433995 123052052 123451148 123398931 107899915 107932943 106417667 106402828 5725073 5720978 8078902 102583812 102606606 102630732 100832008 100841255 107782163 107776537
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