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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   CYCA3;1   mitotic cyclin a1-type 
 gma-r.7   CYCA3;1   mitotic cyclin a1-type 
 gma-m.5   CYCA3;1   mitotic cyclin a1-type 
 gma-u.5   100791691   putative cyclin-A3-1 
 mtr-u.5   25489918   putative cyclin-A3-1 
 mtr-u.5   25489921   putative cyclin-A3-1 
 ppo-u.5   18104821   putative cyclin-A3-1 
 ath-u.5   CYCA3;1   Cyclin A3;1 
 ath-u.5   CYCA3;2   cyclin-dependent protein kinase 3;2 
 vvi-u.5   100250548   putative cyclin-A3-1 
 sly-u.5   101267520   putative cyclin-A3-1 
 sly-u.5   101258929   G2/mitotic-specific cyclin C13-1-like 
 sly-u.5   101258635   putative cyclin-A3-1 
 osa-u.5   4333422   cyclin-A3-1 
 osa-u.5   4352642   cyclin-A3-2-like 
 zma-u.5   100280138   uncharacterized LOC100280138 
 zma-u.5   100280674   cyclin-A2 
 zma-u.5   103650257   cyclin-A3-2-like 

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Top 50 coexpressed genes to CYCA3;1 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CYCA3;1 (gma-u.5 coexpression data)

CoexMap"547779"


gmaCYCA3;1 | Entrez gene ID : 547779      
Species gma mtr ppo ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 4 2 1 2 1 3 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0044772 [list] [network] mitotic cell cycle phase transition  (92 genes)  IEA  
GO:0000079 [list] [network] regulation of cyclin-dependent protein serine/threonine kinase activity  (102 genes)  IEA  
GO CC
GO:0000307 [list] [network] cyclin-dependent protein kinase holoenzyme complex  (157 genes)  IEA  
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0016538 [list] [network] cyclin-dependent protein serine/threonine kinase regulator activity  (100 genes)  IEA  
Protein NP_001237765.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  mito 1,  E.R. 1  (predict for NP_001237765.1)
Subcellular
localization
TargetP
other 2  (predict for NP_001237765.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
CYCA3;1

.
gma-r.7
for
CYCA3;1

.
gma-m.5
for
CYCA3;1

.
gma-u.5
for
100791691

.
mtr-u.5
for
25489918

.
mtr-u.5
for
25489921

.
ppo-u.5
for
18104821

.
ath-u.5
for
CYCA3;1

.
ath-u.5
for
CYCA3;2

.
vvi-u.5
for
100250548

.
sly-u.5
for
101267520

.
sly-u.5
for
101258929

.
sly-u.5
for
101258635

.
osa-u.5
for
4333422

.
osa-u.5
for
4352642

.
zma-u.5
for
100280138

.
zma-u.5
for
100280674

.
zma-u.5
for
103650257

.


Ortholog ID: 1000
Species ath ath sly sly zma zma bra bra vvi mtr tae hvu ghi ghi bna bna sbi sot cit cit bdi bdi nta nta
Symbol CYCA3;1 CYCA3;2 LOC101255181 LOC101267520 LOC100216646 LOC100280138 LOC103827996 LOC103868712 LOC100250548 LOC25489921 LOC123119622 LOC123395514 LOC107917057 LOC107938357 LOC106371865 LOC106426410 LOC8074274 LOC102585677 LOC102621044 LOC102611949 LOC100833039 LOC100845231 LOC107824914 LOC107804529
Function* Cyclin A3;1 cyclin-dependent protein kinase 3;2 G2/mitotic-specific cyclin C13-1-like putative cyclin-A3-1 cyclin superfamily protein, putative uncharacterized LOC100280138 putative cyclin-A3-1 cyclin-A3-2 putative cyclin-A3-1 putative cyclin-A3-1 cyclin-A3-2 cyclin-A3-2-like cyclin-A3-1 cyclin-A3-1 cyclin-A3-4 cyclin-A3-2 cyclin-A3-2 putative cyclin-A3-1 putative cyclin-A3-1 putative cyclin-A3-1 cyclin-A3-1 cyclin-A3-2 G2/mitotic-specific cyclin C13-1-like putative cyclin-A3-1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 5
ath03440 Homologous recombination 5
ath03420 Nucleotide excision repair 4
ath03430 Mismatch repair 4
ath03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 3
ath03030 DNA replication 3
ath03420 Nucleotide excision repair 2
ath03430 Mismatch repair 2
ath03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00240 Pyrimidine metabolism 4
sly01232 Nucleotide metabolism 4
sly00230 Purine metabolism 2
sly00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
sly03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 3
zma00240 Pyrimidine metabolism 3
zma01232 Nucleotide metabolism 3
zma00230 Purine metabolism 2
zma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 6
bra03420 Nucleotide excision repair 3
bra03430 Mismatch repair 3
bra03440 Homologous recombination 3
bra03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04814 Motor proteins 4
bra00240 Pyrimidine metabolism 3
bra01232 Nucleotide metabolism 3
bra00230 Purine metabolism 2
bra00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03430 Mismatch repair 3
mtr03030 DNA replication 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 2
ghi00670 One carbon pool by folate 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
ghi00730 Thiamine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi00270 Cysteine and methionine metabolism 2
ghi00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 7
sot03460 Fanconi anemia pathway 5
sot03440 Homologous recombination 4
sot03420 Nucleotide excision repair 2
sot03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 6
bdi03440 Homologous recombination 2
bdi03460 Fanconi anemia pathway 2
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 2
bdi03410 Base excision repair 2
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 5
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834324 841124 101255181 101267520 100216646 100280138 103827996 103868712 100250548 25489921 123119622 123395514 107917057 107938357 106371865 106426410 8074274 102585677 102621044 102611949 100833039 100845231 107824914 107804529
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