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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   547953   glutamine synthetase nodule isozyme 
 gma-r.7   547953   glutamine synthetase nodule isozyme 
 gma-m.5   547953   glutamine synthetase nodule isozyme 
 gma-u.5   100780873   glutamine synthetase leaf isozyme, chloroplastic 
 gma-u.5   548082   glutamate--ammonia ligase 
 gma-u.5   GS-2   glutamine synthetase precursor 
 mtr-u.5   120575736   glutamine synthetase leaf isozyme, chloroplastic 
 mtr-u.5   11406645   glutamine synthetase cytosolic isozyme 
 mtr-u.5   25486062   glutamine synthetase leaf isozyme, chloroplastic 
 ppo-u.5   18105568   glutamine synthetase nodule isozyme 
 ppo-u.5   7493567   glutamine synthetase cytosolic isozyme 1 
 ppo-u.5   7486383   glutamine synthetase cytosolic isozyme 1-1 
 ath-u.5   GS2   glutamine synthetase 2 
 ath-u.5   GSR2   uncharacterized protein 
 ath-u.5   GLN1;5   glutamine synthetase 1;5 
 vvi-u.5   GS   glutamine synthetase 
 vvi-u.5   100242605   glutamine synthetase leaf isozyme, chloroplastic 
 vvi-u.5   100246404   glutamine synthetase 
 sly-u.5   101261030   glutamine synthetase-like 
 sly-u.5   GS2   glutamine synthetase 
 osa-u.5   4332108   glutamine synthetase cytosolic isozyme 1-2-like 
 osa-u.5   4330649   glutamine synthetase cytosolic isozyme 1-1-like 
 osa-u.5   4337272   glutamine synthetase, chloroplastic-like 
 zma-u.5   542214   glutamine synthetase 4 
 zma-u.5   542746   glutamine synthetase 1 
 zma-u.5   542520   glutamine synthetase 6 

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Top 50 coexpressed genes to 547953 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 547953 (gma-u.5 coexpression data)

CoexMap"547953"


gmaLOC547953 | Entrez gene ID : 547953      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 3 3 3 3 2 3 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx00220 [list] [network] Arginine biosynthesis (61 genes)
gmx00250 [list] [network] Alanine, aspartate and glutamate metabolism (92 genes)
gmx00630 [list] [network] Glyoxylate and dicarboxylate metabolism (134 genes)
gmx00910 [list] [network] Nitrogen metabolism (60 genes)
gmx01230 [list] [network] Biosynthesis of amino acids (403 genes)
gmx04075 [list] [network] Plant hormone signal transduction (888 genes)
GO BP
GO:0006542 [list] [network] glutamine biosynthetic process  (11 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0004356 [list] [network] glutamine synthetase activity  (11 genes)  IEA  
Protein NP_001242332.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 10  (predict for NP_001242332.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001242332.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
547953

.
gma-r.7
for
547953

.
gma-m.5
for
547953

.
gma-u.5
for
100780873

.
gma-u.5
for
548082

.
gma-u.5
for
GS-2

.
mtr-u.5
for
120575736

.
mtr-u.5
for
11406645

.
mtr-u.5
for
25486062

.
ppo-u.5
for
18105568

.
ppo-u.5
for
7493567

.
ppo-u.5
for
7486383

.
ath-u.5
for
GS2

.
ath-u.5
for
GSR2

.
ath-u.5
for
GLN1;5

.
vvi-u.5
for
GS

.
vvi-u.5
for
100242605

.
vvi-u.5
for
100246404

.
sly-u.5
for
101261030

.
sly-u.5
for
GS2

.
osa-u.5
for
4332108

.
osa-u.5
for
4330649

.
osa-u.5
for
4337272

.
zma-u.5
for
542214

.
zma-u.5
for
542746

.
zma-u.5
for
542520

.


Ortholog ID: 531
Species ath ath gma gma sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi bna bna cre sbi sbi sot cit cit bdi bdi nta nta
Symbol GLN1;4 GLN1;5 LOC100817922 GS1alpha gts1 LOC4333896 LOC4332108 LOC542214 LOC542746 LOC103859729 LOC103839002 LOC100261413 LOC100246404 LOC18106624 LOC7469108 LOC11427840 LOC11406645 LOC123095878 LOC123085134 LOC123401521 LOC123447464 LOC107895357 LOC106390791 LOC111197712 CHLRE_02g113200v5 LOC110431761 LOC110436381 LOC102595103 LOC102626318 LOC102611307 LOC100837122 LOC100845598 LOC107766022 LOC107789070
Function* glutamine synthetase 1;4 glutamine synthetase 1;5 glutamine synthetase PR-2 cytosolic glutamine synthetase alpha glutamine synthetase cytosolic isozyme 1-1 glutamine synthetase cytosolic isozyme 1-3-like glutamine synthetase cytosolic isozyme 1-2-like glutamine synthetase 4 glutamine synthetase 1 glutamine synthetase cytosolic isozyme 1-3 glutamine synthetase cytosolic isozyme 1-3 glutamine synthetase leaf isozyme, chloroplastic glutamine synthetase glutamine synthetase cytosolic isozyme 1 glutamine synthetase leaf isozyme, chloroplastic glutamine synthetase nodule isozyme glutamine synthetase cytosolic isozyme glutamine synthetase cytosolic isozyme 1-3 glutamine synthetase cytosolic isozyme 1-2 glutamine synthetase glutamine synthetase cytosolic isozyme 1-3 glutamine synthetase nodule isozyme glutamine synthetase, chloroplastic-like glutamine synthetase cytosolic isozyme 1-2 uncharacterized protein glutamine synthetase root isozyme 2 glutamine synthetase, chloroplastic glutamine synthetase cytosolic isozyme 1-1 glutamine synthetase nodule isozyme glutamine synthetase nodule isozyme glutamine synthetase cytosolic isozyme 1-3 glutamine synthetase cytosolic isozyme 1-1 glutamine synthetase, chloroplastic glutamine synthetase cytosolic isozyme 1-1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00250 Alanine, aspartate and glutamate metabolism 3
ath00910 Nitrogen metabolism 3
ath01230 Biosynthesis of amino acids 3
ath00220 Arginine biosynthesis 2
ath00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00071 Fatty acid degradation 8
gma01212 Fatty acid metabolism 7
gma00592 alpha-Linolenic acid metabolism 6
gma00280 Valine, leucine and isoleucine degradation 4
gma01040 Biosynthesis of unsaturated fatty acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00220 Arginine biosynthesis 2
gma00250 Alanine, aspartate and glutamate metabolism 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
gma00910 Nitrogen metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00910 Nitrogen metabolism 3
sly00250 Alanine, aspartate and glutamate metabolism 2
sly01230 Biosynthesis of amino acids 2
sly00920 Sulfur metabolism 2
sly01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 5
zma00630 Glyoxylate and dicarboxylate metabolism 5
zma01230 Biosynthesis of amino acids 5
zma01200 Carbon metabolism 5
zma00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 4
zma01200 Carbon metabolism 4
zma00910 Nitrogen metabolism 3
zma00010 Glycolysis / Gluconeogenesis 3
zma01310 Nitrogen cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 4
bra00220 Arginine biosynthesis 3
bra00250 Alanine, aspartate and glutamate metabolism 3
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra00910 Nitrogen metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00220 Arginine biosynthesis 4
bra01230 Biosynthesis of amino acids 4
bra00250 Alanine, aspartate and glutamate metabolism 3
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra00910 Nitrogen metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 5
vvi00630 Glyoxylate and dicarboxylate metabolism 5
vvi00260 Glycine, serine and threonine metabolism 3
vvi00195 Photosynthesis 2
vvi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 2
vvi04075 Plant hormone signal transduction 2
vvi00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 11
ppo00630 Glyoxylate and dicarboxylate metabolism 8
ppo01230 Biosynthesis of amino acids 8
ppo00710 Carbon fixation by Calvin cycle 7
ppo00250 Alanine, aspartate and glutamate metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00710 Carbon fixation by Calvin cycle 6
mtr01200 Carbon metabolism 6
mtr01230 Biosynthesis of amino acids 5
mtr00010 Glycolysis / Gluconeogenesis 4
mtr00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 3
mtr00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae02010 ABC transporters 3
tae00220 Arginine biosynthesis 3
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00630 Glyoxylate and dicarboxylate metabolism 3
tae00910 Nitrogen metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 3
tae00500 Starch and sucrose metabolism 3
tae00220 Arginine biosynthesis 3
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 4
hvu04075 Plant hormone signal transduction 3
hvu04016 MAPK signaling pathway - plant 2
hvu04070 Phosphatidylinositol signaling system 2
hvu04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00310 Lysine degradation 3
hvu00630 Glyoxylate and dicarboxylate metabolism 3
hvu00260 Glycine, serine and threonine metabolism 2
hvu00280 Valine, leucine and isoleucine degradation 2
hvu00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00630 Glyoxylate and dicarboxylate metabolism 5
ghi00220 Arginine biosynthesis 4
ghi00250 Alanine, aspartate and glutamate metabolism 4
ghi00910 Nitrogen metabolism 4
ghi01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 6
bna00220 Arginine biosynthesis 4
bna00250 Alanine, aspartate and glutamate metabolism 4
bna00630 Glyoxylate and dicarboxylate metabolism 4
bna00910 Nitrogen metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 4
bna00250 Alanine, aspartate and glutamate metabolism 4
bna00630 Glyoxylate and dicarboxylate metabolism 4
bna00910 Nitrogen metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00220 Arginine biosynthesis 10
cre01230 Biosynthesis of amino acids 8
cre00250 Alanine, aspartate and glutamate metabolism 6
cre00230 Purine metabolism 4
cre01210 2-Oxocarboxylic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 2
sbi04142 Lysosome 2
sbi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00910 Nitrogen metabolism 5
sbi01200 Carbon metabolism 4
sbi00030 Pentose phosphate pathway 3
sbi01310 Nitrogen cycle 3
sbi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00910 Nitrogen metabolism 4
sot01230 Biosynthesis of amino acids 3
sot01200 Carbon metabolism 3
sot00220 Arginine biosynthesis 2
sot00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 5
cit03050 Proteasome 4
cit00220 Arginine biosynthesis 2
cit00250 Alanine, aspartate and glutamate metabolism 2
cit00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 4
cit03050 Proteasome 3
cit00630 Glyoxylate and dicarboxylate metabolism 3
cit01200 Carbon metabolism 2
cit00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi00220 Arginine biosynthesis 2
bdi00250 Alanine, aspartate and glutamate metabolism 2
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 4
bdi00670 One carbon pool by folate 3
bdi01200 Carbon metabolism 3
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 12
nta01200 Carbon metabolism 10
nta00260 Glycine, serine and threonine metabolism 8
nta00710 Carbon fixation by Calvin cycle 6
nta00220 Arginine biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
nta01230 Biosynthesis of amino acids 6
nta00030 Pentose phosphate pathway 4
nta00710 Carbon fixation by Calvin cycle 4
nta01200 Carbon metabolism 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831519 841268 100817922 547620 543756 4333896 4332108 542214 542746 103859729 103839002 100261413 100246404 18106624 7469108 11427840 11406645 123095878 123085134 123401521 123447464 107895357 106390791 111197712 5725229 110431761 110436381 102595103 102626318 102611307 100837122 100845598 107766022 107789070
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