ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	COPE2	epsilon2-COP
gma-r.7	COPE2	epsilon2-COP
gma-m.5	COPE2	epsilon2-COP
gma-u.5	COPE1	epsilon1-COP
mtr-u.5	25486358	coatomer subunit epsilon-2
ppo-u.5	7485150	coatomer subunit epsilon-1
ath-u.5	AT2G34840	Coatomer epsilon subunit
ath-u.5	AT1G30630	Coatomer epsilon subunit
vvi-u.5	100264563	coatomer subunit epsilon-like
sly-u.5	101245110	coatomer subunit epsilon-1
sly-u.5	101266095	coatomer subunit epsilon-1
osa-u.5	4336967	coatomer subunit epsilon-1-like
zma-u.5	100194321	Coatomer subunit epsilon-2
zma-u.5	541811	coatomer protein 2

functional annotation

KEGG

GO BP

GO:0006891 [list] [network] intra-Golgi vesicle-mediated transport	(52 genes)	IEA
GO:0006890 [list] [network] retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	(59 genes)	IEA
GO:0006888 [list] [network] endoplasmic reticulum to Golgi vesicle-mediated transport	(170 genes)	IEA

GO CC

GO:0030126 [list] [network] COPI vesicle coat

(32 genes)

IEA

GO MF

GO:0005198 [list] [network] structural molecule activity	(824 genes)	IEA
GO:0005515 [list] [network] protein binding	(7243 genes)	IEA

Protein

NP_001241057.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, chlo 4, extr 1

(predict for NP_001241057.1)

Subcellular
localization
TargetP

other 4

(predict for NP_001241057.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for COPE2 .	gma-r.7 for COPE2 .	gma-m.5 for COPE2 .	gma-u.5 for COPE1 .	mtr-u.5 for 25486358 .	ppo-u.5 for 7485150 .	ath-u.5 for AT2G34840 .	ath-u.5 for AT1G30630 .	vvi-u.5 for 100264563 .	sly-u.5 for 101245110 .	sly-u.5 for 101266095 .	osa-u.5 for 4336967 .	zma-u.5 for 100194321 .	zma-u.5 for 541811 .

Ortholog ID: 4881

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

cre

sbi

sot

cit

bdi

nta

Symbol

AT1G30630

AT2G34840

COPE1

COPE2

Function^*

Coatomer epsilon subunit

epsilon1-COP

epsilon2-COP

coatomer subunit epsilon-1

coatomer subunit epsilon-1-like

Coatomer subunit epsilon-2

coatomer protein 2

coatomer subunit epsilon-2

coatomer subunit epsilon-1

coatomer subunit epsilon-like

coatomer subunit epsilon-1

coatomer subunit epsilon-2

coatomer subunit epsilon-1

coatomer subunit epsilon-2

coatomer subunit epsilon-1

uncharacterized protein

coatomer subunit epsilon-1

coatomer subunit epsilon-1-like

coatomer subunit epsilon-1

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	4
ath04130	SNARE interactions in vesicular transport	2
ath04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	2
ath04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	4
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	3
sly04145	Phagosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	3
osa01200	Carbon metabolism	3
osa00020	Citrate cycle (TCA cycle)	2
osa00640	Propanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01240	Biosynthesis of cofactors	5
zma00061	Fatty acid biosynthesis	4
zma01212	Fatty acid metabolism	4
zma00780	Biotin metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	2
bra00010	Glycolysis / Gluconeogenesis	2
bra00230	Purine metabolism	2
bra01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	5
bra03015	mRNA surveillance pathway	2
bra04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	3
vvi00510	N-Glycan biosynthesis	2
vvi00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01240	Biosynthesis of cofactors	4
ppo00040	Pentose and glucuronate interconversions	2
ppo00053	Ascorbate and aldarate metabolism	2
ppo00520	Amino sugar and nucleotide sugar metabolism	2
ppo00541	Biosynthesis of various nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	2
mtr00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3
hvu00510	N-Glycan biosynthesis	2
hvu03015	mRNA surveillance pathway	2
hvu04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00190	Oxidative phosphorylation	5
cre04145	Phagosome	5
cre00514	Other types of O-glycan biosynthesis	4
cre00520	Amino sugar and nucleotide sugar metabolism	3
cre01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	3
sbi04120	Ubiquitin mediated proteolysis	2
sbi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	5
sot03060	Protein export	2
sot04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04145	Phagosome	5
sot04517	IgSF CAM signaling	5
sot04814	Motor proteins	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	3
cit04145	Phagosome	2
cit00541	Biosynthesis of various nucleotide sugars	2
cit01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	4
bdi04142	Lysosome	2
bdi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	4
nta00190	Oxidative phosphorylation	3
nta04145	Phagosome	3
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	4
nta00190	Oxidative phosphorylation	3
nta04145	Phagosome	3

Expression

Expression pattern

Entrez Gene ID^*

839943

818049

547468

547992

101266095

101245110

4336967

100194321

541811

103865360

103840372

100264563

7485150

25486358

123046466

123190203

123427630

107906332

107941169

106402825

106367256

5718666

8072329

102581548

102582432

102629999

100834675

107803985

107785121

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to COPE2 (gma-u.5 coexpression data)

Top 50 enrichment test to COPE2 (gma-u.5 coexpression data)


Species	gma	mtr	ppo	ath	vvi	sly	osa	zma	sbi	nta	bra	cre	hvu	cit	bdi	sot	tae	bna	ghi
Paralog	4	1	1	2	1	2	1	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to COPE2 (gma-u.5 coexpression data)

Top 50 enrichment test to COPE2 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**