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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   DAO   copper amino oxidase 
 gma-r.7   DAO   copper amino oxidase 
 gma-m.5   DAO   copper amino oxidase 
 gma-u.5   100819571   putative copper amine oxidase 
 gma-u.5   100817473   primary amine oxidase 
 mtr-u.5   25494032   primary amine oxidase 
 mtr-u.5   11413174   primary amine oxidase 2 
 mtr-u.5   25492054   primary amine oxidase 
 ppo-u.5   7473402   amine oxidase [copper-containing] alpha 2, peroxisomal 
 ath-u.5   AO1   amine oxidase 1 
 ath-u.5   AT1G31690   Copper amine oxidase family protein 
 vvi-u.5   100244323   amine oxidase [copper-containing] alpha 2, peroxisomal 
 vvi-u.5   100251211   amine oxidase [copper-containing] alpha 3, peroxisomal 
 osa-u.5   4340946   amine oxidase [copper-containing] alpha 2, peroxisomal 
 osa-u.5   4340945   amine oxidase [copper-containing] alpha 3, peroxisomal 
 osa-u.5   4343673   amine oxidase [copper-containing] alpha 2, peroxisomal 
 zma-u.5   100279491   primary amine oxidase 

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Top 50 coexpressed genes to DAO (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to DAO (gma-u.5 coexpression data)

CoexMap"548000"


gmaDAO | Entrez gene ID : 548000      
Species gma mtr ppo ath vvi osa zma bdi hvu bra cit bna sbi sly ghi sot nta cre tae
Paralog 5 3 1 2 2 3 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx00260 [list] [network] Glycine, serine and threonine metabolism (112 genes)
gmx00350 [list] [network] Tyrosine metabolism (82 genes)
gmx00360 [list] [network] Phenylalanine metabolism (50 genes)
gmx00410 [list] [network] beta-Alanine metabolism (94 genes)
gmx00950 [list] [network] Isoquinoline alkaloid biosynthesis (46 genes)
gmx00960 [list] [network] Tropane, piperidine and pyridine alkaloid biosynthesis (49 genes)
GO BP
GO:0009308 [list] [network] amine metabolic process  (142 genes)  IEA  
GO CC
GO MF
GO:0008131 [list] [network] primary methylamine oxidase activity  (16 genes)  IEA  
GO:0048038 [list] [network] quinone binding  (21 genes)  IEA  
GO:0005507 [list] [network] copper ion binding  (135 genes)  IEA  
Protein NP_001237211.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 3,  E.R. 2,  cyto_plas 2,  plas 1,  extr 1,  vacu 1,  cyto_pero 1  (predict for NP_001237211.2)
Subcellular
localization
TargetP
scret 9  (predict for NP_001237211.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
DAO
gma-r.7
for
DAO
gma-m.5
for
DAO
gma-u.5
for
100819571
gma-u.5
for
100817473
mtr-u.5
for
25494032
mtr-u.5
for
11413174
mtr-u.5
for
25492054
ppo-u.5
for
7473402
ath-u.5
for
AO1
ath-u.5
for
AT1G31690
vvi-u.5
for
100244323
vvi-u.5
for
100251211
osa-u.5
for
4340946
osa-u.5
for
4340945
osa-u.5
for
4343673
zma-u.5
for
100279491


Ortholog ID: 2094
Species gma mtr mtr ath bra vvi vvi ghi ghi bna cit cit sot osa osa zma tae hvu hvu sbi bdi
Symbol LOC100802062 LOC25494030 LOC25494032 AO1 LOC103833801 LOC100251211 LOC100244323 LOC121214757 LOC107928452 LOC106402089 LOC102611727 LOC102625302 LOC102605322 LOC4343673 LOC4340945 LOC100279491 LOC123084804 LOC123447059 LOC123449536 LOC8056374 LOC100824747
Function* primary amine oxidase primary amine oxidase primary amine oxidase amine oxidase 1 primary amine oxidase 2 amine oxidase [copper-containing] alpha 3, peroxisomal amine oxidase [copper-containing] alpha 2, peroxisomal primary amine oxidase primary amine oxidase 1 primary amine oxidase 2 amine oxidase [copper-containing] alpha 2, peroxisomal-like amine oxidase [copper-containing] alpha 3, peroxisomal-like primary amine oxidase-like amine oxidase [copper-containing] alpha 2, peroxisomal amine oxidase [copper-containing] alpha 3, peroxisomal primary amine oxidase primary amine oxidase primary amine oxidase-like primary amine oxidase 2-like primary amine oxidase 2 primary amine oxidase 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 2
gma00260 Glycine, serine and threonine metabolism 2
gma00350 Tyrosine metabolism 2
gma00360 Phenylalanine metabolism 2
gma00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00260 Glycine, serine and threonine metabolism 3
mtr00350 Tyrosine metabolism 3
mtr00360 Phenylalanine metabolism 3
mtr00410 beta-Alanine metabolism 3
mtr00950 Isoquinoline alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00260 Glycine, serine and threonine metabolism 3
mtr00350 Tyrosine metabolism 3
mtr00360 Phenylalanine metabolism 3
mtr00410 beta-Alanine metabolism 3
mtr00950 Isoquinoline alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00380 Tryptophan metabolism 3
bra00966 Glucosinolate biosynthesis 3
bra01210 2-Oxocarboxylic acid metabolism 3
bra00270 Cysteine and methionine metabolism 2
bra00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 3
vvi04626 Plant-pathogen interaction 2
vvi00942 Anthocyanin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
vvi04016 MAPK signaling pathway - plant 3
vvi04075 Plant hormone signal transduction 3
vvi04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00062 Fatty acid elongation 4
ghi04626 Plant-pathogen interaction 4
ghi00053 Ascorbate and aldarate metabolism 2
ghi00340 Histidine metabolism 2
ghi00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00260 Glycine, serine and threonine metabolism 2
cit00350 Tyrosine metabolism 2
cit00360 Phenylalanine metabolism 2
cit00410 beta-Alanine metabolism 2
cit00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00260 Glycine, serine and threonine metabolism 2
cit00350 Tyrosine metabolism 2
cit00360 Phenylalanine metabolism 2
cit00410 beta-Alanine metabolism 2
cit00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00100 Steroid biosynthesis 4
sot00260 Glycine, serine and threonine metabolism 3
sot00350 Tyrosine metabolism 3
sot00360 Phenylalanine metabolism 3
sot00410 beta-Alanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 4
osa00260 Glycine, serine and threonine metabolism 2
osa00350 Tyrosine metabolism 2
osa00360 Phenylalanine metabolism 2
osa00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00350 Tyrosine metabolism 3
osa00260 Glycine, serine and threonine metabolism 2
osa00360 Phenylalanine metabolism 2
osa00410 beta-Alanine metabolism 2
osa00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 3
tae00260 Glycine, serine and threonine metabolism 2
tae00350 Tyrosine metabolism 2
tae00360 Phenylalanine metabolism 2
tae00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00260 Glycine, serine and threonine metabolism 2
hvu00350 Tyrosine metabolism 2
hvu00360 Phenylalanine metabolism 2
hvu00410 beta-Alanine metabolism 2
hvu00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00260 Glycine, serine and threonine metabolism 2
hvu00350 Tyrosine metabolism 2
hvu00360 Phenylalanine metabolism 2
hvu00410 beta-Alanine metabolism 2
hvu00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00460 Cyanoamino acid metabolism 4
sbi00591 Linoleic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00941 Flavonoid biosynthesis 4
bdi00944 Flavone and flavonol biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100802062 25494030 25494032 827152 103833801 100251211 100244323 121214757 107928452 106402089 102611727 102625302 102605322 4343673 4340945 100279491 123084804 123447059 123449536 8056374 100824747
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