Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   CGS2   cystathionine-gamma-synthase 
 gma-r.7   CGS2   cystathionine-gamma-synthase 
 gma-m.5   CGS2   cystathionine-gamma-synthase 
 gma-u.5   CGS1   cystathionine gamma-synthase 1, chloroplastic 
 mtr-u.5   11406997   cystathionine gamma-synthase 1, chloroplastic 
 mtr-u.5   11427680   cystathionine gamma-synthase 1, chloroplastic 
 ppo-u.5   7482488   cystathionine gamma-synthase 1, chloroplastic 
 ath-u.5   MTO1   Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 
 vvi-u.5   100267880   cystathionine gamma-synthase 1, chloroplastic 
 sly-u.5   CGS   cystathionine gamma synthase 
 zma-u.5   100191523   uncharacterized LOC100191523 

close


Top 50 coexpressed genes to CGS2 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to CGS2 (gma-u.5 coexpression data)

CoexMap"548023"


gmaCGS2 | Entrez gene ID : 548023    
Species gma mtr ppo ath vvi sly zma sbi nta bra osa cre cit hvu bdi sot tae bna ghi
Paralog 4 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx00270 [list] [network] Cysteine and methionine metabolism (212 genes)
GO BP
GO:0019346 [list] [network] transsulfuration  (7 genes)  IEA  
GO:0009086 [list] [network] methionine biosynthetic process  (33 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (1168 genes)  IEA  
GO MF
GO:0003962 [list] [network] cystathionine gamma-synthase activity  (2 genes)  IEA  
GO:0030170 [list] [network] pyridoxal phosphate binding  (149 genes)  IEA  
Protein NP_001237572.2 [sequence] [blastp]
XP_040860774.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 1,  E.R. 1,  nucl 1,  plas 1,  vacu 1,  cyto_mito 1,  nucl_plas 1,  cyto_E.R. 1  (predict for NP_001237572.2)
chlo 5,  E.R. 1,  nucl 1,  cyto 1,  mito 1,  plas 1,  vacu 1,  cyto_nucl 1,  nucl_plas 1,  mito_plas 1,  cyto_plas 1  (predict for XP_040860774.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001237572.2)
chlo 9  (predict for XP_040860774.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
CGS2

.
gma-r.7
for
CGS2

.
gma-m.5
for
CGS2

.
gma-u.5
for
CGS1

.
mtr-u.5
for
11406997

.
mtr-u.5
for
11427680

.
ppo-u.5
for
7482488

.
ath-u.5
for
MTO1

.
vvi-u.5
for
100267880

.
sly-u.5
for
CGS

.
zma-u.5
for
100191523

.


Ortholog ID: 2149
Species ath gma gma sly zma zma bra vvi ppo mtr mtr hvu ghi ghi bna cre sbi sbi sot sot cit bdi nta nta
Symbol MTO1 CGS2 CGS1 CGS LOC100191523 LOC541650 LOC103870949 LOC100267880 LOC7482488 LOC11427680 LOC11406997 LOC123448483 LOC107955507 LOC107943482 LOC106453252 CHLRE_03g144627v5 LOC8080479 LOC8059635 LOC102601571 CGS2 LOC102621879 LOC100837599 LOC107822634 LOC107774020
Function* Pyridoxal phosphate (PLP)-dependent transferases superfamily protein cystathionine-gamma-synthase cystathionine gamma-synthase 1, chloroplastic cystathionine gamma synthase uncharacterized LOC100191523 cystathionine gamma-synthase 1 cystathionine gamma-synthase 1, chloroplastic cystathionine gamma-synthase 1, chloroplastic cystathionine gamma-synthase 1, chloroplastic cystathionine gamma-synthase 1, chloroplastic cystathionine gamma-synthase 1, chloroplastic cystathionine gamma-synthase 1, chloroplastic cystathionine gamma-synthase 1, chloroplastic cystathionine gamma-synthase 1, chloroplastic cystathionine gamma-synthase 1, chloroplastic uncharacterized protein cystathionine gamma-synthase 1, chloroplastic probable cystathionine gamma-synthase 2 cystathionine gamma-synthase 1, chloroplastic-like cystathionine gamma-synthase cystathionine gamma-synthase 1, chloroplastic cystathionine gamma-synthase 1, chloroplastic cystathionine gamma-synthase 1, chloroplastic-like cystathionine gamma-synthase 1, chloroplastic-like
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01210 2-Oxocarboxylic acid metabolism 11
ath00966 Glucosinolate biosynthesis 10
ath01230 Biosynthesis of amino acids 7
ath00290 Valine, leucine and isoleucine biosynthesis 6
ath00270 Cysteine and methionine metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 3
gma00900 Terpenoid backbone biosynthesis 2
gma00270 Cysteine and methionine metabolism 2
gma00220 Arginine biosynthesis 2
gma01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00920 Sulfur metabolism 5
gma01320 Sulfur cycle 5
gma00900 Terpenoid backbone biosynthesis 3
gma01230 Biosynthesis of amino acids 3
gma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 7
sly00010 Glycolysis / Gluconeogenesis 5
sly00620 Pyruvate metabolism 4
sly01240 Biosynthesis of cofactors 4
sly00020 Citrate cycle (TCA cycle) 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 2
zma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
zma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00270 Cysteine and methionine metabolism 6
bra01230 Biosynthesis of amino acids 6
bra00966 Glucosinolate biosynthesis 6
bra01210 2-Oxocarboxylic acid metabolism 6
bra00920 Sulfur metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 3
vvi01210 2-Oxocarboxylic acid metabolism 3
vvi00010 Glycolysis / Gluconeogenesis 2
vvi00020 Citrate cycle (TCA cycle) 2
vvi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 4
ppo00020 Citrate cycle (TCA cycle) 3
ppo00190 Oxidative phosphorylation 2
ppo04814 Motor proteins 2
ppo00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 10
mtr00270 Cysteine and methionine metabolism 6
mtr00670 One carbon pool by folate 5
mtr01240 Biosynthesis of cofactors 4
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 3
hvu03010 Ribosome 3
hvu00710 Carbon fixation by Calvin cycle 2
hvu01230 Biosynthesis of amino acids 2
hvu00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00010 Glycolysis / Gluconeogenesis 4
sot00020 Citrate cycle (TCA cycle) 4
sot00620 Pyruvate metabolism 4
sot00785 Lipoic acid metabolism 4
sot01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00270 Cysteine and methionine metabolism 2
sot00190 Oxidative phosphorylation 2
sot04142 Lysosome 2
sot04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 4
cit01230 Biosynthesis of amino acids 3
cit00260 Glycine, serine and threonine metabolism 2
cit00270 Cysteine and methionine metabolism 2
cit00640 Propanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00270 Cysteine and methionine metabolism 4
bdi01230 Biosynthesis of amino acids 4
bdi00250 Alanine, aspartate and glutamate metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 5
nta04626 Plant-pathogen interaction 4
nta00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 5
nta04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821292 548023 100794584 543920 100191523 541650 103870949 100267880 7482488 11427680 11406997 123448483 107955507 107943482 106453252 5721297 8080479 8059635 102601571 102577796 102621879 100837599 107822634 107774020
The preparation time of this page was 0.1 [sec].