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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   548073   S-adenosyl-L-methionine:delta24-sterol-C-methyltransferase 
 gma-r.7   548073   S-adenosyl-L-methionine:delta24-sterol-C-methyltransferase 
 gma-m.5   548073   S-adenosyl-L-methionine:delta24-sterol-C-methyltransferase 
 gma-u.5   100817534   cycloartenol-C-24-methyltransferase 
 gma-u.5   100796978   cycloartenol-C-24-methyltransferase-like 
 mtr-u.5   11415411   cycloartenol-C-24-methyltransferase 
 ppo-u.5   18095100   cycloartenol-C-24-methyltransferase 
 ppo-u.5   7467341   cycloartenol-C-24-methyltransferase 
 ath-u.5   SMT1   sterol methyltransferase 1 
 vvi-u.5   100252116   cycloartenol-C-24-methyltransferase 
 vvi-u.5   100263590   cycloartenol-C-24-methyltransferase 
 sly-u.5   101256047   cycloartenol-C-24-methyltransferase-like 
 sly-u.5   101252433   cycloartenol-C-24-methyltransferase 1 
 osa-u.5   4342690   cycloartenol-C-24-methyltransferase 1-like 
 osa-u.5   9269350   cycloartenol-C-24-methyltransferase 1-like 
 zma-u.5   541682   (S)-adenosyl-L-methionine:delta 24-sterol methyltransferase 

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Top 50 coexpressed genes to 548073 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 548073 (gma-u.5 coexpression data)

CoexMap"548073"


gmaLOC548073 | Entrez gene ID : 548073      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 5 1 2 1 2 2 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx00100 [list] [network] Steroid biosynthesis (58 genes)
GO BP
GO:0016126 [list] [network] sterol biosynthetic process  (39 genes)  IEA  
GO CC
GO:0005783 [list] [network] endoplasmic reticulum  (889 genes)  IEA  
GO MF
GO:0003838 [list] [network] sterol 24-C-methyltransferase activity  (4 genes)  IEA  
Protein NP_001238391.2 [sequence] [blastp]
XP_040861576.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  chlo 1,  mito 1,  golg 1,  chlo_mito 1  (predict for NP_001238391.2)
cyto 8,  chlo 1,  nucl 1,  plas 1,  nucl_plas 1  (predict for XP_040861576.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001238391.2)
other 6  (predict for XP_040861576.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
548073

.
gma-r.7
for
548073

.
gma-m.5
for
548073

.
gma-u.5
for
100817534

.
gma-u.5
for
100796978

.
mtr-u.5
for
11415411

.
ppo-u.5
for
18095100

.
ppo-u.5
for
7467341

.
ath-u.5
for
SMT1

.
vvi-u.5
for
100252116

.
vvi-u.5
for
100263590

.
sly-u.5
for
101256047

.
sly-u.5
for
101252433

.
osa-u.5
for
4342690

.
osa-u.5
for
9269350

.
zma-u.5
for
541682

.


Ortholog ID: 5171
Species ath gma gma sly sly osa osa zma bra bra vvi vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sbi sot sot cit bdi bdi nta nta
Symbol SMT1 LOC100796978 LOC100817534 LOC101252433 LOC101256047 LOC9269350 LOC4342690 LOC541682 LOC103850891 LOC103856028 LOC100263590 LOC100252116 LOC7467341 LOC18095100 LOC11415411 LOC543246 LOC123105904 LOC123449848 LOC107915814 LOC107950679 LOC106431054 LOC106440921 LOC8078421 LOC8064726 LOC102589132 LOC102581721 LOC102628258 LOC100834229 LOC100826864 LOC107813194 LOC107806298
Function* sterol methyltransferase 1 cycloartenol-C-24-methyltransferase-like cycloartenol-C-24-methyltransferase cycloartenol-C-24-methyltransferase 1 cycloartenol-C-24-methyltransferase-like cycloartenol-C-24-methyltransferase 1-like cycloartenol-C-24-methyltransferase 1-like (S)-adenosyl-L-methionine:delta 24-sterol methyltransferase cycloartenol-C-24-methyltransferase cycloartenol-C-24-methyltransferase cycloartenol-C-24-methyltransferase cycloartenol-C-24-methyltransferase cycloartenol-C-24-methyltransferase cycloartenol-C-24-methyltransferase cycloartenol-C-24-methyltransferase cycloartenol-C-24-methyltransferase 1 cycloartenol-C-24-methyltransferase 1 cycloartenol-C-24-methyltransferase 1 cycloartenol-C-24-methyltransferase cycloartenol-C-24-methyltransferase cycloartenol-C-24-methyltransferase cycloartenol-C-24-methyltransferase cycloartenol-C-24-methyltransferase 1 cycloartenol-C-24-methyltransferase 1 cycloartenol-C-24-methyltransferase-like cycloartenol-C-24-methyltransferase 1 cycloartenol-C-24-methyltransferase cycloartenol-C-24-methyltransferase 1 cycloartenol-C-24-methyltransferase 1 cycloartenol-C-24-methyltransferase 1-like cycloartenol-C-24-methyltransferase 1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04814 Motor proteins 9
ath04145 Phagosome 7
ath04517 IgSF CAM signaling 7
ath00900 Terpenoid backbone biosynthesis 4
ath00100 Steroid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00100 Steroid biosynthesis 4
gma00630 Glyoxylate and dicarboxylate metabolism 4
gma01200 Carbon metabolism 4
gma04075 Plant hormone signal transduction 3
gma01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
sly01230 Biosynthesis of amino acids 3
sly01240 Biosynthesis of cofactors 2
sly00010 Glycolysis / Gluconeogenesis 2
sly00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00100 Steroid biosynthesis 9
sly00280 Valine, leucine and isoleucine degradation 2
sly00650 Butanoate metabolism 2
sly00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00100 Steroid biosynthesis 3
osa00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 4
zma01200 Carbon metabolism 3
zma04145 Phagosome 2
zma00010 Glycolysis / Gluconeogenesis 2
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 3
vvi00061 Fatty acid biosynthesis 2
vvi00780 Biotin metabolism 2
vvi01212 Fatty acid metabolism 2
vvi00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 8
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
ppo00270 Cysteine and methionine metabolism 2
ppo00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr04145 Phagosome 7
mtr04517 IgSF CAM signaling 7
mtr04814 Motor proteins 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00620 Pyruvate metabolism 6
tae00630 Glyoxylate and dicarboxylate metabolism 6
tae01200 Carbon metabolism 6
tae00071 Fatty acid degradation 3
tae00280 Valine, leucine and isoleucine degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00620 Pyruvate metabolism 9
tae00630 Glyoxylate and dicarboxylate metabolism 9
tae01200 Carbon metabolism 9
tae00280 Valine, leucine and isoleucine degradation 6
tae00310 Lysine degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 3
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00100 Steroid biosynthesis 6
ghi00061 Fatty acid biosynthesis 2
ghi00780 Biotin metabolism 2
ghi01212 Fatty acid metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00100 Steroid biosynthesis 6
ghi00061 Fatty acid biosynthesis 2
ghi00780 Biotin metabolism 2
ghi01212 Fatty acid metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00100 Steroid biosynthesis 7
bna04141 Protein processing in endoplasmic reticulum 6
bna01200 Carbon metabolism 4
bna01230 Biosynthesis of amino acids 4
bna00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00100 Steroid biosynthesis 8
bna04141 Protein processing in endoplasmic reticulum 4
bna01200 Carbon metabolism 4
bna01230 Biosynthesis of amino acids 4
bna00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 3
sbi04144 Endocytosis 2
sbi05100 Bacterial invasion of epithelial cells 2
sbi00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00010 Glycolysis / Gluconeogenesis 3
sbi00020 Citrate cycle (TCA cycle) 3
sbi00620 Pyruvate metabolism 3
sbi01200 Carbon metabolism 3
sbi00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 3
sot00780 Biotin metabolism 2
sot00010 Glycolysis / Gluconeogenesis 2
sot00020 Citrate cycle (TCA cycle) 2
sot00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03060 Protein export 2
bdi00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04146 Peroxisome 3
bdi03060 Protein export 2
bdi04144 Endocytosis 2
bdi00071 Fatty acid degradation 2
bdi00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00100 Steroid biosynthesis 4
nta00380 Tryptophan metabolism 2
nta04075 Plant hormone signal transduction 2
nta00440 Phosphonate and phosphinate metabolism 2
nta00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00100 Steroid biosynthesis 4
nta00380 Tryptophan metabolism 2
nta04075 Plant hormone signal transduction 2
nta04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831216 100796978 100817534 101252433 101256047 9269350 4342690 541682 103850891 103856028 100263590 100252116 7467341 18095100 11415411 543246 123105904 123449848 107915814 107950679 106431054 106440921 8078421 8064726 102589132 102581721 102628258 100834229 100826864 107813194 107806298
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