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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   548080   HMG-Y related protein variant A 
 gma-r.7   548080   HMG-Y related protein variant A 
 gma-m.5   548080   HMG-Y related protein variant A 
 gma-u.5   100804682   HMG-Y-related protein A 
 gma-u.5   100793697   HMG-Y-related protein A 
 gma-u.5   100802642   HMG-Y-related protein B 
 mtr-u.5   11410322   HMG-Y-related protein B 
 mtr-u.5   11426698   HMG-Y-related protein A 
 ppo-u.5   7459767   HMG-Y-related protein B 
 ppo-u.5   7482897   HMG-Y-related protein B 
 ppo-u.5   7487391   HMG-Y-related protein A 
 ath-u.5   HMGA   high mobility group A 
 vvi-u.5   100244042   HMG-Y-related protein A 
 sly-u.5   101260139   HMG-Y-related protein B 
 sly-u.5   101268754   HMG-Y-related protein A 
 sly-u.5   101257130   HMG-Y-related protein A 
 osa-u.5   4347003   HMG-Y-related protein A 
 osa-u.5   4345627   HMG-Y-related protein A 
 zma-u.5   541871   high mobility group I/Y-2 
 zma-u.5   100277576   uncharacterized LOC100277576 

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Top 50 coexpressed genes to 548080 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 548080 (gma-u.5 coexpression data)

CoexMap"548080"


gmaLOC548080 | Entrez gene ID : 548080    
Species gma mtr ppo ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 6 2 3 1 1 3 2 2 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045910 [list] [network] negative regulation of DNA recombination  (21 genes)  IEA  
GO:0030261 [list] [network] chromosome condensation  (34 genes)  IEA  
GO:0006334 [list] [network] nucleosome assembly  (60 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (3122 genes)  IEA  
GO CC
GO:0000786 [list] [network] nucleosome  (104 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (353 genes)  IEA  
GO:0000785 [list] [network] chromatin  (372 genes)  IEA  
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
GO:0031492 [list] [network] nucleosomal DNA binding  (17 genes)  IEA  
GO:0003690 [list] [network] double-stranded DNA binding  (950 genes)  IEA  
Protein NP_001238502.1 [sequence] [blastp]
XP_006574481.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001238502.1)
nucl 9  (predict for XP_006574481.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001238502.1)
other 9  (predict for XP_006574481.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
548080

.
gma-r.7
for
548080

.
gma-m.5
for
548080

.
gma-u.5
for
100804682

.
gma-u.5
for
100793697

.
gma-u.5
for
100802642

.
mtr-u.5
for
11410322

.
mtr-u.5
for
11426698

.
ppo-u.5
for
7459767

.
ppo-u.5
for
7482897

.
ppo-u.5
for
7487391

.
ath-u.5
for
HMGA

.
vvi-u.5
for
100244042

.
sly-u.5
for
101260139

.
sly-u.5
for
101268754

.
sly-u.5
for
101257130

.
osa-u.5
for
4347003

.
osa-u.5
for
4345627

.
zma-u.5
for
541871

.
zma-u.5
for
100277576

.


Ortholog ID: 2855
Species ath gma gma sly sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot sot cit cit bdi bdi nta nta
Symbol HMGA LOC100804682 LOC100802642 LOC101268754 LOC101260139 LOC4345627 LOC4347003 LOC100277576 LOC541871 LOC103827568 LOC103854054 LOC100244042 LOC7482897 LOC18106641 LOC11426698 LOC11410322 LOC123105044 LOC123113340 LOC123452257 LOC107901969 LOC107934494 LOC106447960 LOC106389164 LOC8075642 LOC102597480 LOC102582893 LOC102619719 LOC102619266 LOC100822567 LOC100846746 LOC107778578 LOC107783486
Function* high mobility group A HMG-Y-related protein A HMG-Y-related protein B HMG-Y-related protein A HMG-Y-related protein B HMG-Y-related protein A HMG-Y-related protein A uncharacterized LOC100277576 high mobility group I/Y-2 HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein B HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein B HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A-like HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A-like HMG-Y-related protein A HMG-Y-related protein B-like HMG-Y-related protein A-like HMG-Y-related protein B-like HMG-Y-related protein B-like HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A-like HMG-Y-related protein A-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04145 Phagosome 4
ath04517 IgSF CAM signaling 4
ath04814 Motor proteins 4
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 4
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 2
osa04141 Protein processing in endoplasmic reticulum 2
osa04145 Phagosome 2
osa03010 Ribosome 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 5
bra00220 Arginine biosynthesis 4
bra00250 Alanine, aspartate and glutamate metabolism 4
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra00910 Nitrogen metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 4
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00240 Pyrimidine metabolism 3
nta01232 Nucleotide metabolism 3
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838055 100804682 100802642 101268754 101260139 4345627 4347003 100277576 541871 103827568 103854054 100244042 7482897 18106641 11426698 11410322 123105044 123113340 123452257 107901969 107934494 106447960 106389164 8075642 102597480 102582893 102619719 102619266 100822567 100846746 107778578 107783486
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