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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g021600v5   uncharacterized protein 
 ath-u.5   AT3G06480   DEAD box RNA helicase family protein 
 ath-u.5   DRH1   DEAD box RNA helicase 1 
 ath-u.5   AT5G14610   DEAD box RNA helicase family protein 
 gma-u.5   100786511   DEAD-box ATP-dependent RNA helicase 46 
 gma-u.5   100806371   DEAD-box ATP-dependent RNA helicase 40 
 gma-u.5   100807830   DEAD-box ATP-dependent RNA helicase 40 
 sly-u.5   101248651   ATP-dependent RNA helicase-like protein DB10 
 sly-u.5   101266555   DEAD-box ATP-dependent RNA helicase 40 
 sly-u.5   101254752   ATP-dependent RNA helicase-like protein DB10 
 osa-u.5   4351155   DEAD-box ATP-dependent RNA helicase 40 
 osa-u.5   4327645   DEAD-box ATP-dependent RNA helicase 14-like 
 osa-u.5   4326190   DEAD-box ATP-dependent RNA helicase 40-like 
 zma-u.5   100381784   putative DEAD-box ATP-dependent RNA helicase family protein 
 zma-u.5   100381583   DEAD-box ATP-dependent RNA helicase 40 
 zma-u.5   109945984   DEAD-box ATP-dependent RNA helicase 40 
 vvi-u.5   100264477   ATP-dependent RNA helicase-like protein DB10 
 vvi-u.5   100252874   DEAD-box ATP-dependent RNA helicase 46 
 ppo-u.5   7468130   DEAD-box ATP-dependent RNA helicase 46 
 ppo-u.5   7487865   DEAD-box ATP-dependent RNA helicase 46 
 ppo-u.5   7461318   DEAD-box ATP-dependent RNA helicase 14-like 
 mtr-u.5   11420002   DEAD-box ATP-dependent RNA helicase 46 
 mtr-u.5   11430941   DEAD-box ATP-dependent RNA helicase 46 

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Top 50 coexpressed genes to CHLRE_01g021600v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g021600v5 (cre-r.1 coexpression data)

CoexMap"5715214"


creCHLRE_01g021600v5 | Entrez gene ID : 5715214      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 3 3 3 3 3 2 3 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03040 [list] [network] Spliceosome (105 genes)
GO BP
GO CC
GO:1990904 [list] [network] ribonucleoprotein complex  (370 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (44 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042928396.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 3  (predict for XP_042928396.1)
Subcellular
localization
TargetP
other 7,  mito 4  (predict for XP_042928396.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g021600v5

.
ath-u.5
for
AT3G06480

.
ath-u.5
for
DRH1

.
ath-u.5
for
AT5G14610

.
gma-u.5
for
100786511

.
gma-u.5
for
100806371

.
gma-u.5
for
100807830

.
sly-u.5
for
101248651

.
sly-u.5
for
101266555

.
sly-u.5
for
101254752

.
osa-u.5
for
4351155

.
osa-u.5
for
4327645

.
osa-u.5
for
4326190

.
zma-u.5
for
100381784

.
zma-u.5
for
100381583

.
zma-u.5
for
109945984

.
vvi-u.5
for
100264477

.
vvi-u.5
for
100252874

.
ppo-u.5
for
7468130

.
ppo-u.5
for
7487865

.
ppo-u.5
for
7461318

.
mtr-u.5
for
11420002

.
mtr-u.5
for
11430941

.


Ortholog ID: 1620
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AT5G14610 AT3G06480 LOC100816455 LOC100786511 LOC101254752 LOC101266555 LOC4326190 LOC4351155 LOC100383248 LOC103636001 LOC103849856 LOC103850938 LOC100264477 LOC100252874 LOC7468130 LOC7487865 LOC11430941 LOC11420002 LOC123077632 LOC123060328 LOC123443054 LOC123442857 LOC121219595 LOC107926050 LOC106431761 LOC106393650 CHLRE_06g291150v5 CHLRE_01g021600v5 LOC110435585 LOC110433588 LOC102606394 LOC102584978 LOC102623779 LOC102608201 LOC100835845 LOC100822322 LOC107769931 LOC107815007
Function* DEAD box RNA helicase family protein DEAD box RNA helicase family protein DEAD-box ATP-dependent RNA helicase 46 DEAD-box ATP-dependent RNA helicase 46 ATP-dependent RNA helicase-like protein DB10 DEAD-box ATP-dependent RNA helicase 40 DEAD-box ATP-dependent RNA helicase 40-like DEAD-box ATP-dependent RNA helicase 40 uncharacterized LOC100383248 DEAD-box ATP-dependent RNA helicase 40 DEAD-box ATP-dependent RNA helicase 14 DEAD-box ATP-dependent RNA helicase 46 ATP-dependent RNA helicase-like protein DB10 DEAD-box ATP-dependent RNA helicase 46 DEAD-box ATP-dependent RNA helicase 46 DEAD-box ATP-dependent RNA helicase 46 DEAD-box ATP-dependent RNA helicase 46 DEAD-box ATP-dependent RNA helicase 46 DEAD-box ATP-dependent RNA helicase 14 DEAD-box ATP-dependent RNA helicase 40 DEAD-box ATP-dependent RNA helicase 14 DEAD-box ATP-dependent RNA helicase 40-like DEAD-box ATP-dependent RNA helicase 46 DEAD-box ATP-dependent RNA helicase 46 DEAD-box ATP-dependent RNA helicase 40 DEAD-box ATP-dependent RNA helicase 14 uncharacterized protein uncharacterized protein DEAD-box ATP-dependent RNA helicase 40-like DEAD-box ATP-dependent RNA helicase 40-like ATP-dependent RNA helicase-like protein DB10 DEAD-box ATP-dependent RNA helicase 46-like DEAD-box ATP-dependent RNA helicase 46 DEAD-box ATP-dependent RNA helicase 46 DEAD-box ATP-dependent RNA helicase 40 DEAD-box ATP-dependent RNA helicase 40 ATP-dependent RNA helicase-like protein DB10 DEAD-box ATP-dependent RNA helicase 40
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 8
mtr03015 mRNA surveillance pathway 3
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03082 ATP-dependent chromatin remodeling 3
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03022 Basal transcription factors 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 6
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi00310 Lysine degradation 2
ghi04016 MAPK signaling pathway - plant 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi00310 Lysine degradation 2
ghi04016 MAPK signaling pathway - plant 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 6
bna03040 Spliceosome 4
bna03082 ATP-dependent chromatin remodeling 2
bna00340 Histidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 7
sbi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot04144 Endocytosis 2
sot03013 Nucleocytoplasmic transport 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03015 mRNA surveillance pathway 2
cit03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00564 Glycerophospholipid metabolism 2
cit00565 Ether lipid metabolism 2
cit03015 mRNA surveillance pathway 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03040 Spliceosome 4
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta04075 Plant hormone signal transduction 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 10
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831313 819825 100816455 100786511 101254752 101266555 4326190 4351155 100383248 103636001 103849856 103850938 100264477 100252874 7468130 7487865 11430941 11420002 123077632 123060328 123443054 123442857 121219595 107926050 106431761 106393650 5721092 5715214 110435585 110433588 102606394 102584978 102623779 102608201 100835845 100822322 107769931 107815007
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