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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g036050v5   uncharacterized protein 
 ath-u.5   MLH1   MUTL-homologue 1 
 gma-u.5   100794788   DNA mismatch repair protein MLH1 
 sly-u.5   MLH1   MLH1 protein 
 osa-u.5   4325393   DNA mismatch repair protein MLH1 
 zma-u.5   103636271   DNA mismatch repair protein MLH1 
 vvi-u.5   100854779   DNA mismatch repair protein MLH1 
 ppo-u.5   7455278   DNA mismatch repair protein MLH1 
 mtr-u.5   11419396   DNA mismatch repair protein MLH1 

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Top 50 coexpressed genes to CHLRE_01g036050v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g036050v5 (cre-r.1 coexpression data)

CoexMap"5715471"


creCHLRE_01g036050v5 | Entrez gene ID : 5715471      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03430 [list] [network] Mismatch repair (15 genes)
cre03460 [list] [network] Fanconi anemia pathway (16 genes)
GO BP
GO:0006298 [list] [network] mismatch repair  (17 genes)  IEA  
GO CC
GO:0032389 [list] [network] MutLalpha complex  (2 genes)  IEA  
GO MF
GO:0030983 [list] [network] mismatched DNA binding  (13 genes)  IEA  
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (19 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (290 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_001690102.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 2,  nucl 2  (predict for XP_001690102.1)
Subcellular
localization
TargetP
other 6  (predict for XP_001690102.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g036050v5

.
ath-u.5
for
MLH1

.
gma-u.5
for
100794788

.
sly-u.5
for
MLH1

.
osa-u.5
for
4325393

.
zma-u.5
for
103636271

.
vvi-u.5
for
100854779

.
ppo-u.5
for
7455278

.
mtr-u.5
for
11419396

.


Ortholog ID: 9560
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol MLH1 LOC100794788 MLH1 LOC4325393 LOC103636271 LOC103858512 LOC100854779 LOC7455278 LOC11419396 LOC123150943 LOC123080801 LOC123445574 LOC107920384 LOC107895080 LOC106435650 LOC106438479 CHLRE_01g036050v5 LOC8074096 LOC102592720 LOC102610589 LOC100845473 LOC142169408 LOC107808834
Function* MUTL-homologue 1 DNA mismatch repair protein MLH1 MLH1 protein DNA mismatch repair protein MLH1 DNA mismatch repair protein MLH1 DNA mismatch repair protein MLH1 DNA mismatch repair protein MLH1 DNA mismatch repair protein MLH1 DNA mismatch repair protein MLH1 DNA mismatch repair protein MLH1 DNA mismatch repair protein MLH1 DNA mismatch repair protein MLH1 DNA mismatch repair protein MLH1 DNA mismatch repair protein MLH1 DNA mismatch repair protein MLH1 DNA mismatch repair protein MLH1 uncharacterized protein DNA mismatch repair protein MLH1 DNA mismatch repair protein MLH1 DNA mismatch repair protein MLH1 DNA mismatch repair protein MLH1 DNA mismatch repair protein MLH1-like DNA mismatch repair protein MLH1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03430 Mismatch repair 8
gma03030 DNA replication 8
gma03410 Base excision repair 7
gma03420 Nucleotide excision repair 7
gma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03460 Fanconi anemia pathway 5
sly03440 Homologous recombination 3
sly03013 Nucleocytoplasmic transport 2
sly03430 Mismatch repair 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 5
zma00970 Aminoacyl-tRNA biosynthesis 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03440 Homologous recombination 2
bra03430 Mismatch repair 2
bra03460 Fanconi anemia pathway 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03410 Base excision repair 5
tae03430 Mismatch repair 5
tae03460 Fanconi anemia pathway 5
tae03040 Spliceosome 2
tae03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03430 Mismatch repair 4
tae03460 Fanconi anemia pathway 4
tae03040 Spliceosome 2
tae03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 2
ghi03460 Fanconi anemia pathway 2
ghi03020 RNA polymerase 2
ghi00061 Fatty acid biosynthesis 2
ghi00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 2
ghi03460 Fanconi anemia pathway 2
ghi03020 RNA polymerase 2
ghi00061 Fatty acid biosynthesis 2
ghi00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00310 Lysine degradation 4
bna03430 Mismatch repair 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03430 Mismatch repair 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03430 Mismatch repair 2
bdi03460 Fanconi anemia pathway 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta03430 Mismatch repair 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03430 Mismatch repair 2
nta03460 Fanconi anemia pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826493 100794788 100125910 4325393 103636271 103858512 100854779 7455278 11419396 123150943 123080801 123445574 107920384 107895080 106435650 106438479 5715471 8074096 102592720 102610589 100845473 142169408 107808834
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