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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g046652v5   uncharacterized protein 
 ath-u.5   AT3G59980   Nucleic acid-binding, OB-fold-like protein 
 gma-u.5   100810696   aminoacyl tRNA synthase complex-interacting multifunctional protein 1 
 gma-u.5   100499829   uncharacterized LOC100499829 
 sly-u.5   101261939   uncharacterized LOC101261939 
 osa-u.5   4335424   uncharacterized LOC4335424 
 zma-u.5   100274127   uncharacterized LOC100274127 
 vvi-u.5   100245646   uncharacterized LOC100245646 
 ppo-u.5   18106384   uncharacterized LOC18106384 
 mtr-u.5   25491976   aminoacyl tRNA synthase complex-interacting multifunctional protein 1 

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Top 50 coexpressed genes to CHLRE_01g046652v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g046652v5 (cre-r.1 coexpression data)

CoexMap"5715658"


creCHLRE_01g046652v5 | Entrez gene ID : 5715658    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0000049 [list] [network] tRNA binding  (34 genes)  IEA  
Protein XP_042928786.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_042928786.1)
Subcellular
localization
TargetP
mito 8,  chlo 3  (predict for XP_042928786.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g046652v5

.
ath-u.5
for
AT3G59980

.
gma-u.5
for
100810696

.
gma-u.5
for
100499829

.
sly-u.5
for
101261939

.
osa-u.5
for
4335424

.
zma-u.5
for
100274127

.
vvi-u.5
for
100245646

.
ppo-u.5
for
18106384

.
mtr-u.5
for
25491976

.


Ortholog ID: 9546
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre cre sbi sot cit bdi nta nta
Symbol AT3G59980 LOC100499829 LOC100810696 LOC101261939 LOC4335424 LOC100274127 LOC103841852 LOC100245646 LOC18106384 LOC25491976 LOC123045201 LOC123188946 LOC123426426 LOC107896228 LOC107915755 LOC106414934 LOC106368419 CHLRE_08g364650v5 CHLRE_01g046652v5 LOC8060865 LOC102589855 LOC102606872 LOC100838413 LOC107774474 LOC107811838
Function* Nucleic acid-binding, OB-fold-like protein uncharacterized LOC100499829 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 uncharacterized LOC101261939 uncharacterized LOC4335424 uncharacterized LOC100274127 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 uncharacterized LOC100245646 uncharacterized LOC18106384 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 tyrosine--tRNA ligase, cytoplasmic aminoacyl tRNA synthase complex-interacting multifunctional protein 1 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 uncharacterized protein uncharacterized protein tyrosine--tRNA ligase, cytoplasmic aminoacyl tRNA synthase complex-interacting multifunctional protein 1 uncharacterized LOC102606872 tyrosine--tRNA ligase, cytoplasmic uncharacterized LOC107774474 uncharacterized LOC107811838
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00053 Ascorbate and aldarate metabolism 2
gma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa04141 Protein processing in endoplasmic reticulum 2
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01210 2-Oxocarboxylic acid metabolism 3
zma01230 Biosynthesis of amino acids 3
zma00290 Valine, leucine and isoleucine biosynthesis 2
zma00660 C5-Branched dibasic acid metabolism 2
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 5
bra00290 Valine, leucine and isoleucine biosynthesis 3
bra00770 Pantothenate and CoA biosynthesis 3
bra01210 2-Oxocarboxylic acid metabolism 3
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
mtr00061 Fatty acid biosynthesis 3
mtr01212 Fatty acid metabolism 3
mtr00290 Valine, leucine and isoleucine biosynthesis 2
mtr00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 5
tae01240 Biosynthesis of cofactors 5
tae00860 Porphyrin metabolism 3
tae00230 Purine metabolism 2
tae00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 6
tae00860 Porphyrin metabolism 3
tae00230 Purine metabolism 3
tae00240 Pyrimidine metabolism 3
tae01232 Nucleotide metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
hvu00860 Porphyrin metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 10
bna01240 Biosynthesis of cofactors 10
bna04016 MAPK signaling pathway - plant 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 10
bna01240 Biosynthesis of cofactors 10
bna04016 MAPK signaling pathway - plant 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 10
cre00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00860 Porphyrin metabolism 10
cre01240 Biosynthesis of cofactors 5
cre03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 3
cit00860 Porphyrin metabolism 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 6
bdi00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta00860 Porphyrin metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta00620 Pyruvate metabolism 2
nta00860 Porphyrin metabolism 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825168 100499829 100810696 101261939 4335424 100274127 103841852 100245646 18106384 25491976 123045201 123188946 123426426 107896228 107915755 106414934 106368419 5721639 5715658 8060865 102589855 102606872 100838413 107774474 107811838
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