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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g051450v5   uncharacterized protein 
 ath-u.5   AT1G19330   histone deacetylase complex subunit 
 ath-u.5   AT1G75060   histone deacetylase complex subunit 
 gma-u.5   100787225   histone deacetylase complex subunit AFR2-like 
 gma-u.5   100806535   uncharacterized LOC100806535 
 gma-u.5   100809195   uncharacterized LOC100809195 
 sly-u.5   101249354   uncharacterized LOC101249354 
 sly-u.5   101252312   uncharacterized LOC101252312 
 osa-u.5   4331195   uncharacterized LOC4331195 
 osa-u.5   4335053   uncharacterized LOC4335053 
 osa-u.5   4348437   uncharacterized LOC4348437 
 zma-u.5   100384613   uncharacterized LOC100384613 
 zma-u.5   100276938   uncharacterized LOC100276938 
 vvi-u.5   100258615   uncharacterized LOC100258615 
 vvi-u.5   100251235   uncharacterized LOC100251235 
 vvi-u.5   100247103   uncharacterized LOC100247103 
 ppo-u.5   18097043   uncharacterized LOC18097043 
 ppo-u.5   7472754   uncharacterized LOC7472754 
 mtr-u.5   25482104   uncharacterized LOC25482104 
 mtr-u.5   25490176   uncharacterized LOC25490176 

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Top 50 coexpressed genes to CHLRE_01g051450v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g051450v5 (cre-r.1 coexpression data)

CoexMap"5715757"


creCHLRE_01g051450v5 | Entrez gene ID : 5715757      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 3 2 3 2 3 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (405 genes)  IEA  
GO CC
GO:0000118 [list] [network] histone deacetylase complex  (17 genes)  IEA  
GO MF
GO:0003712 [list] [network] transcription coregulator activity  (73 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_001690251.1 [sequence] [blastp]
XP_042928887.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  chlo 3,  cyto_mito 3  (predict for XP_001690251.1)
mito 6,  chlo 3,  cyto_mito 3  (predict for XP_042928887.1)
Subcellular
localization
TargetP
mito 4,  other 4  (predict for XP_001690251.1)
mito 4,  other 4  (predict for XP_042928887.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g051450v5

.
ath-u.5
for
AT1G19330

.
ath-u.5
for
AT1G75060

.
gma-u.5
for
100787225

.
gma-u.5
for
100806535

.
gma-u.5
for
100809195

.
sly-u.5
for
101249354

.
sly-u.5
for
101252312

.
osa-u.5
for
4331195

.
osa-u.5
for
4335053

.
osa-u.5
for
4348437

.
zma-u.5
for
100384613

.
zma-u.5
for
100276938

.
vvi-u.5
for
100258615

.
vvi-u.5
for
100251235

.
vvi-u.5
for
100247103

.
ppo-u.5
for
18097043

.
ppo-u.5
for
7472754

.
mtr-u.5
for
25482104

.
mtr-u.5
for
25490176

.


Ortholog ID: 2107
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre cre sbi sot sot cit cit bdi nta nta
Symbol AT1G75060 AT1G19330 LOC100787225 LOC100806535 LOC101249354 LOC101252312 LOC4348437 LOC4331195 LOC100384613 LOC100276938 LOC103842651 LOC103852930 LOC100258615 LOC100247103 LOC7472754 LOC7483776 LOC25490176 LOC25482104 LOC123050918 LOC123186877 LOC123431443 LOC107890688 LOC107910170 BNAC05G14990D LOC106373928 CHLRE_01g051450v5 CHLRE_17g722050v5 LOC8077149 LOC102587819 LOC102590970 LOC102623550 LOC102621761 LOC100843116 LOC107805493 LOC107780433
Function* histone deacetylase complex subunit histone deacetylase complex subunit histone deacetylase complex subunit AFR2-like uncharacterized LOC100806535 uncharacterized LOC101249354 uncharacterized LOC101252312 uncharacterized LOC4348437 uncharacterized LOC4331195 uncharacterized LOC100384613 uncharacterized LOC100276938 uncharacterized LOC103842651 uncharacterized LOC103852930 uncharacterized LOC100258615 uncharacterized LOC100247103 uncharacterized LOC7472754 uncharacterized LOC7483776 uncharacterized LOC25490176 uncharacterized LOC25482104 uncharacterized LOC123050918 uncharacterized LOC123186877 uncharacterized LOC123431443 uncharacterized LOC107890688 uncharacterized LOC107910170 uncharacterized BNAC05G14990D uncharacterized LOC106373928 uncharacterized protein uncharacterized protein uncharacterized LOC8077149 uncharacterized LOC102587819 uncharacterized LOC102590970 hypothetical protein uncharacterized LOC102621761 uncharacterized LOC100843116 uncharacterized LOC107805493 uncharacterized LOC107780433
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma04136 Autophagy - other 2
gma04382 Cornified envelope formation 2
gma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04145 Phagosome 4
vvi04517 IgSF CAM signaling 4
vvi04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 2
mtr00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
mtr00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04145 Phagosome 8
tae04517 IgSF CAM signaling 8
tae04814 Motor proteins 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 3
tae00260 Glycine, serine and threonine metabolism 2
tae00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00190 Oxidative phosphorylation 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04130 SNARE interactions in vesicular transport 2
sbi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03020 RNA polymerase 5
sot00380 Tryptophan metabolism 2
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00510 N-Glycan biosynthesis 2
bdi00513 Various types of N-glycan biosynthesis 2
bdi04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843844 838515 100787225 100806535 101249354 101252312 4348437 4331195 100384613 100276938 103842651 103852930 100258615 100247103 7472754 7483776 25490176 25482104 123050918 123186877 123431443 107890688 107910170 106401550 106373928 5715757 66057032 8077149 102587819 102590970 102623550 102621761 100843116 107805493 107780433
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