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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g439200v5   uncharacterized protein 
 ath-u.5   EMB2820   Cytidine/deoxycytidylate deaminase family protein 
 gma-u.5   100789556   tRNA-specific adenosine deaminase TAD3 
 sly-u.5   101264494   tRNA-specific adenosine deaminase TAD3 
 osa-u.5   4346442   tRNA-specific adenosine deaminase TAD3 
 zma-u.5   103641482   tRNA-specific adenosine deaminase TAD3 
 zma-u.5   100280681   hydrolase/ zinc ion binding protein 
 vvi-u.5   100256903   tRNA-specific adenosine deaminase TAD3 
 ppo-u.5   18104268   tRNA-specific adenosine deaminase TAD3 
 mtr-u.5   11416732   tRNA-specific adenosine deaminase TAD3 

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Top 50 coexpressed genes to CHLRE_10g439200v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_10g439200v5 (cre-r.1 coexpression data)

CoexMap"5716080"


creCHLRE_10g439200v5 | Entrez gene ID : 5716080      
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 1 1 1 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0002100 [list] [network] tRNA wobble adenosine to inosine editing  (3 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0052717 [list] [network] tRNA-specific adenosine-34 deaminase activity  (2 genes)  IEA  
Protein XP_001690555.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 1,  chlo 1,  mito 1,  plas 1,  pero 1,  chlo_mito 1,  cysk_nucl 1,  E.R._vacu 1,  mito_plas 1  (predict for XP_001690555.1)
Subcellular
localization
TargetP
other 7  (predict for XP_001690555.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g439200v5

.
ath-u.5
for
EMB2820

.
gma-u.5
for
100789556

.
sly-u.5
for
101264494

.
osa-u.5
for
4346442

.
zma-u.5
for
103641482

.
zma-u.5
for
100280681

.
vvi-u.5
for
100256903

.
ppo-u.5
for
18104268

.
mtr-u.5
for
11416732

.


Ortholog ID: 8622
Species ath gma sly osa zma zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi bdi nta nta
Symbol EMB2820 LOC100789556 LOC101264494 LOC4346442 LOC100280681 LOC103641482 LOC103830853 LOC100256903 LOC18104268 LOC11416732 LOC123103322 LOC123120744 LOC123396021 LOC107959561 LOC107914169 BNACNNG17020D LOC106352242 CHLRE_10g439200v5 LOC8065991 LOC102580876 LOC102618686 LOC100828319 LOC100822778 LOC107810747 LOC107824859
Function* Cytidine/deoxycytidylate deaminase family protein tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3 hydrolase/ zinc ion binding protein tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3-like tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3-like uncharacterized protein probable inactive tRNA-specific adenosine deaminase-like protein 3 probable inactive tRNA-specific adenosine deaminase-like protein 3 tRNA-specific adenosine deaminase TAD3 probable inactive tRNA-specific adenosine deaminase-like protein 3 probable inactive tRNA-specific adenosine deaminase-like protein 3 tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00510 N-Glycan biosynthesis 2
zma00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00541 Biosynthesis of various nucleotide sugars 2
bra01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00562 Inositol phosphate metabolism 2
ppo04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
tae03010 Ribosome 2
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00340 Histidine metabolism 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta00999 Biosynthesis of various plant secondary metabolites 2
nta01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832539 100789556 101264494 4346442 100280681 103641482 103830853 100256903 18104268 11416732 123103322 123120744 123396021 107959561 107914169 106401848 106352242 5716080 8065991 102580876 102618686 100828319 100822778 107810747 107824859
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