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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g500650v5   uncharacterized protein 
 ath-u.5   EMB2730   Ribonuclease II/R family protein 
 gma-u.5   100803243   ribonuclease II, chloroplastic/mitochondrial 
 sly-u.5   101247453   ribonuclease II, chloroplastic/mitochondrial 
 osa-u.5   4327498   ribonuclease II, chloroplastic/mitochondrial 
 zma-u.5   103651024   ribonuclease II, chloroplastic/mitochondrial 
 vvi-u.5   100240818   ribonuclease II, chloroplastic/mitochondrial 
 ppo-u.5   7454930   ribonuclease II, chloroplastic/mitochondrial 
 mtr-u.5   25491581   ribonuclease II, chloroplastic/mitochondrial 

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Top 50 coexpressed genes to CHLRE_12g500650v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g500650v5 (cre-r.1 coexpression data)

CoexMap"5716382"


creCHLRE_12g500650v5 | Entrez gene ID : 5716382    
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006402 [list] [network] mRNA catabolic process  (56 genes)  IEA  
GO CC
GO:0000178 [list] [network] exosome (RNase complex)  (16 genes)  IEA  
GO:0000932 [list] [network] P-body  (23 genes)  IEA  
GO MF
GO:0000175 [list] [network] 3'-5'-RNA exonuclease activity  (22 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042918286.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  nucl 1  (predict for XP_042918286.1)
Subcellular
localization
TargetP
chlo 4  (predict for XP_042918286.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g500650v5

.
ath-u.5
for
EMB2730

.
gma-u.5
for
100803243

.
sly-u.5
for
101247453

.
osa-u.5
for
4327498

.
zma-u.5
for
103651024

.
vvi-u.5
for
100240818

.
ppo-u.5
for
7454930

.
mtr-u.5
for
25491581

.


Ortholog ID: 10926
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol EMB2730 LOC100803243 LOC101247453 LOC4327498 LOC103651024 LOC103847466 LOC100240818 LOC7454930 LOC25491581 LOC123180145 LOC123106979 LOC123398768 LOC107889683 LOC107943711 LOC106438827 LOC125605110 CHLRE_12g500650v5 LOC8059664 LOC102601885 LOC102620834 LOC100828290 LOC107811133 LOC107794135
Function* Ribonuclease II/R family protein ribonuclease II, chloroplastic/mitochondrial ribonuclease II, chloroplastic/mitochondrial ribonuclease II, chloroplastic/mitochondrial ribonuclease II, chloroplastic/mitochondrial ribonuclease II, chloroplastic/mitochondrial ribonuclease II, chloroplastic/mitochondrial ribonuclease II, chloroplastic/mitochondrial ribonuclease II, chloroplastic/mitochondrial ribonuclease II, chloroplastic/mitochondrial ribonuclease II, chloroplastic/mitochondrial ribonuclease II, chloroplastic/mitochondrial ribonuclease II, chloroplastic/mitochondrial ribonuclease II, chloroplastic/mitochondrial ribonuclease II, chloroplastic/mitochondrial-like ribonuclease II, chloroplastic/mitochondrial uncharacterized protein ribonuclease II, chloroplastic/mitochondrial ribonuclease II, chloroplastic/mitochondrial ribonuclease II, chloroplastic/mitochondrial ribonuclease II, chloroplastic/mitochondrial ribonuclease II, chloroplastic/mitochondrial ribonuclease II, chloroplastic/mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 3
hvu03010 Ribosome 2
hvu00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 3
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 3
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 5
cre01230 Biosynthesis of amino acids 4
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830864 100803243 101247453 4327498 103651024 103847466 100240818 7454930 25491581 123180145 123106979 123398768 107889683 107943711 106438827 125605110 5716382 8059664 102601885 102620834 100828290 107811133 107794135
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