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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g502350v5   uncharacterized protein 
 ath-u.5   RECQL2   RECQ helicase L2 
 gma-u.5   100817635   ATP-dependent DNA helicase Q-like 2 
 sly-u.5   101268017   ATP-dependent DNA helicase Q-like 2 
 osa-u.5   4351234   ATP-dependent DNA helicase Q-like 2 
 zma-u.5   100382802   Mediator of RNA polymerase II transcription subunit 34 
 vvi-u.5   100256266   ATP-dependent DNA helicase Q-like 2 
 ppo-u.5   7491914   ATP-dependent DNA helicase Q-like 2 
 mtr-u.5   11409950   ATP-dependent DNA helicase Q-like 2 

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Top 50 coexpressed genes to CHLRE_12g502350v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g502350v5 (cre-r.1 coexpression data)

CoexMap"5716410"


creCHLRE_12g502350v5 | Entrez gene ID : 5716410    
Species cre ath gma sly osa zma vvi ppo mtr ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (82 genes)  IEA  
GO CC
GO:0016592 [list] [network] mediator complex  (16 genes)  IEA  
GO:0005694 [list] [network] chromosome  (334 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0009378 [list] [network] four-way junction helicase activity  (7 genes)  IEA  
GO:0043138 [list] [network] 3'-5' DNA helicase activity  (16 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (1484 genes)  IEA  
Protein XP_042918258.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 4,  nucl 2,  E.R._plas 2,  cyto 1,  pero 1,  cyto_pero 1  (predict for XP_042918258.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042918258.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g502350v5

.
ath-u.5
for
RECQL2

.
gma-u.5
for
100817635

.
sly-u.5
for
101268017

.
osa-u.5
for
4351234

.
zma-u.5
for
100382802

.
vvi-u.5
for
100256266

.
ppo-u.5
for
7491914

.
mtr-u.5
for
11409950

.


Ortholog ID: 10495
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol RECQL2 LOC100817635 LOC101268017 LOC4351234 LOC100382802 LOC103833810 LOC100256266 LOC7491914 LOC11409950 LOC123091731 LOC123096715 LOC123448118 LOC107909120 LOC107928239 LOC106416161 LOC106397225 CHLRE_12g502350v5 LOC8083623 LOC102593600 LOC102630216 LOC100837005 LOC107814520 LOC107815379
Function* RECQ helicase L2 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 Mediator of RNA polymerase II transcription subunit 34 mediator of RNA polymerase II transcription subunit 34 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 uncharacterized protein mediator of RNA polymerase II transcription subunit 34 mediator of RNA polymerase II transcription subunit 34-like ATP-dependent DNA helicase Q-like 2 mediator of RNA polymerase II transcription subunit 34 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma00510 N-Glycan biosynthesis 2
gma00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03460 Fanconi anemia pathway 2
sly03013 Nucleocytoplasmic transport 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 6
tae03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 2
ghi03018 RNA degradation 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 3
bna03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 3
bna03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta03015 mRNA surveillance pathway 2
nta00780 Biotin metabolism 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 840026 100817635 101268017 4351234 100382802 103833810 100256266 7491914 11409950 123091731 123096715 123448118 107909120 107928239 106416161 106397225 5716410 8083623 102593600 102630216 100837005 107814520 107815379
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