ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_12g503950v5	uncharacterized protein
ath-u.5	AT4G08690	Sec14p-like phosphatidylinositol transfer family protein
ath-u.5	AT4G36640	Sec14p-like phosphatidylinositol transfer family protein
ath-u.5	AT1G22180	Sec14p-like phosphatidylinositol transfer family protein
gma-u.5	100796911	phosphatidylinositol transfer protein 3-like
gma-u.5	100790867	phosphatidylinositol transfer protein 3
gma-u.5	100780151	phosphatidylinositol transfer protein 3
sly-u.5	101245237	uncharacterized LOC101245237
sly-u.5	101247611	uncharacterized LOC101247611
sly-u.5	101258514	uncharacterized LOC101258514
osa-u.5	4333953	phosphatidylinositol transfer protein PDR17
osa-u.5	4330749	uncharacterized LOC4330749
osa-u.5	4326204	uncharacterized LOC4326204
zma-u.5	100279110	uncharacterized LOC100279110
zma-u.5	100274321	Sec14p-like phosphatidylinositol transfer family protein
zma-u.5	100276317	uncharacterized LOC100276317
vvi-u.5	100244435	uncharacterized LOC100244435
vvi-u.5	100260491	uncharacterized LOC100260491
vvi-u.5	100262592	uncharacterized LOC100262592
ppo-u.5	7473174	uncharacterized LOC7473174
ppo-u.5	18099279	uncharacterized LOC18099279
ppo-u.5	7495142	uncharacterized LOC7495142
mtr-u.5	25489423	phosphatidylinositol transfer protein 3
mtr-u.5	11431996	phosphatidylinositol transfer protein 3
mtr-u.5	11406582	phosphatidylinositol transfer protein 3

Top 50 coexpressed genes to CHLRE_12g503950v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_12g503950v5 (cre-r.1 coexpression data)

CoexMap"5716438"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_042918237.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 2, nucl 2, cyto_pero 2, cyto_E.R. 2

(predict for XP_042918237.1)

Subcellular
localization
TargetP

other 7

(predict for XP_042918237.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_12g503950v5	ath-u.5 for AT4G08690	ath-u.5 for AT4G36640	ath-u.5 for AT1G22180	gma-u.5 for 100796911	gma-u.5 for 100790867	gma-u.5 for 100780151	sly-u.5 for 101245237	sly-u.5 for 101247611	sly-u.5 for 101258514	osa-u.5 for 4333953	osa-u.5 for 4330749	osa-u.5 for 4326204	zma-u.5 for 100279110	zma-u.5 for 100274321	zma-u.5 for 100276317	vvi-u.5 for 100244435	vvi-u.5 for 100260491	vvi-u.5 for 100262592	ppo-u.5 for 7473174	ppo-u.5 for 18099279	ppo-u.5 for 7495142	mtr-u.5 for 25489423	mtr-u.5 for 11431996	mtr-u.5 for 11406582

Ortholog

Ortholog ID: 540

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

Sec14p-like phosphatidylinositol transfer family protein

CRAL-TRIO domain-containing protein C23B6.04c-like

random slug protein 5-like

uncharacterized LOC101258514

uncharacterized LOC101245237

uncharacterized LOC4326204

phosphatidylinositol transfer protein PDR17

Sec14p-like phosphatidylinositol transfer family protein

uncharacterized LOC100279110

phosphatidylinositol transfer protein 3

uncharacterized LOC100250501

uncharacterized LOC100260491

uncharacterized LOC7473174

uncharacterized LOC18099279

phosphatidylinositol transfer protein 3

phosphatidylinositol transfer protein 3-like

phosphatidylinositol transfer protein PDR16

phosphatidylinositol transfer protein 3

CRAL-TRIO domain-containing protein C23B6.04c

phosphatidylinositol transfer protein 3-like

random slug protein 5

transporter-like protein

random slug protein 5-like

uncharacterized LOC102626911

uncharacterized LOC102625391

phosphatidylinositol transfer protein PDR17

phosphatidylinositol transfer protein 3

uncharacterized LOC107803654

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01230	Biosynthesis of amino acids	3
cre00270	Cysteine and methionine metabolism	2
cre01240	Biosynthesis of cofactors	2
cre00340	Histidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00940	Phenylpropanoid biosynthesis	10
ath01230	Biosynthesis of amino acids	6
ath00400	Phenylalanine, tyrosine and tryptophan biosynthesis	4
ath00030	Pentose phosphate pathway	3
ath01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	2
osa04141	Protein processing in endoplasmic reticulum	2
osa00020	Citrate cycle (TCA cycle)	2
osa00190	Oxidative phosphorylation	2
osa01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00010	Glycolysis / Gluconeogenesis	3
osa01200	Carbon metabolism	3
osa01230	Biosynthesis of amino acids	3
osa04075	Plant hormone signal transduction	2
osa00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	8
zma04145	Phagosome	7
zma04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00900	Terpenoid backbone biosynthesis	4
zma00280	Valine, leucine and isoleucine degradation	2
zma00650	Butanoate metabolism	2
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	2
bra00020	Citrate cycle (TCA cycle)	2
bra01200	Carbon metabolism	2
bra01230	Biosynthesis of amino acids	2
bra01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00010	Glycolysis / Gluconeogenesis	3
mtr00030	Pentose phosphate pathway	3
mtr00051	Fructose and mannose metabolism	3
mtr00710	Carbon fixation by Calvin cycle	3
mtr01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00941	Flavonoid biosynthesis	7
mtr04712	Circadian rhythm - plant	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3
tae04626	Plant-pathogen interaction	3
tae00010	Glycolysis / Gluconeogenesis	2
tae00020	Citrate cycle (TCA cycle)	2
tae00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	6
ghi00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00100	Steroid biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00460	Cyanoamino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00900	Terpenoid backbone biosynthesis	6
sot00280	Valine, leucine and isoleucine degradation	3
sot00650	Butanoate metabolism	3
sot00100	Steroid biosynthesis	3
sot00908	Zeatin biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00052	Galactose metabolism	2
sot00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	2
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00900	Terpenoid backbone biosynthesis	4

Expression

Expression pattern

Entrez Gene ID^*

5724960

66054215

826436

843854

100800024

100802091

101258514

101245237

4326204

4333953

100383282

100279110

103866906

103858491

100250501

100260491

7473174

18099279

25489423

11431996

123128348

123061034

123443458

107909394

107905044

106409480

106355241

8085831

8059979

102577451

102594629

102626911

102625391

100846868

100834901

107803654

The preparation time of this page was 0.2 [sec].


Species	cre	ath	gma	sly	osa	zma	vvi	ppo	mtr	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	sot
Paralog	1	3	3	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_12g503950v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g503950v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**