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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g489700v5   uncharacterized protein 
 ath-u.5   OTC   ornithine carbamoyltransferase 
 gma-u.5   100796780   ornithine carbamoyltransferase, chloroplastic 
 gma-u.5   100775828   ornithine carbamoyltransferase, chloroplastic 
 sly-u.5   OTC   ornithine carbamoyltransferase 
 sly-u.5   101246902   ornithine transcarbamylase, chloroplastic 
 osa-u.5   9269231   ornithine carbamoyltransferase, chloroplastic 
 zma-u.5   100284885   ornithine carbamoyltransferase 
 zma-u.5   100280306   uncharacterized LOC100280306 
 vvi-u.5   100243725   ornithine transcarbamylase, chloroplastic 
 ppo-u.5   7477624   ornithine transcarbamylase, chloroplastic 
 mtr-u.5   25490205   ornithine carbamoyltransferase, chloroplastic 
 mtr-u.5   25482166   ornithine carbamoyltransferase, chloroplastic 

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Top 50 coexpressed genes to CHLRE_12g489700v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g489700v5 (cre-r.1 coexpression data)

CoexMap"5716689"


creCHLRE_12g489700v5 | Entrez gene ID : 5716689      
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 1 2 2 1 2 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00220 [list] [network] Arginine biosynthesis (23 genes)
cre01230 [list] [network] Biosynthesis of amino acids (116 genes)
GO BP
GO:0019240 [list] [network] citrulline biosynthetic process  (1 genes)  IEA  
GO:0042450 [list] [network] L-arginine biosynthetic process via ornithine  (2 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (3013 genes)  IEA  
GO MF
GO:0004585 [list] [network] ornithine carbamoyltransferase activity  (1 genes)  IEA  
GO:0016597 [list] [network] amino acid binding  (10 genes)  IEA  
Protein XP_001690929.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 5  (predict for XP_001690929.1)
Subcellular
localization
TargetP
chlo 6,  mito 6  (predict for XP_001690929.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g489700v5

.
ath-u.5
for
OTC

.
gma-u.5
for
100796780

.
gma-u.5
for
100775828

.
sly-u.5
for
OTC

.
sly-u.5
for
101246902

.
osa-u.5
for
9269231

.
zma-u.5
for
100284885

.
zma-u.5
for
100280306

.
vvi-u.5
for
100243725

.
ppo-u.5
for
7477624

.
mtr-u.5
for
25490205

.
mtr-u.5
for
25482166

.


Ortholog ID: 7464
Species ath gma gma sly sly osa zma zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol OTC LOC100796780 LOC100775828 OTC LOC101246902 LOC9269231 LOC100284885 LOC100280306 LOC103830654 LOC100243725 LOC7477624 LOC25490205 LOC25482166 LOC123128123 LOC123137917 LOC123403689 LOC107943527 LOC107905438 LOC106353674 LOC106353531 CHLRE_12g489700v5 LOC8073861 LOC102591304 LOC102598576 LOC102618690 LOC100846818 LOC107819553 LOC107822172
Function* ornithine carbamoyltransferase ornithine carbamoyltransferase, chloroplastic ornithine carbamoyltransferase, chloroplastic ornithine carbamoyltransferase ornithine transcarbamylase, chloroplastic ornithine carbamoyltransferase, chloroplastic ornithine carbamoyltransferase uncharacterized LOC100280306 ornithine carbamoyltransferase, chloroplastic ornithine transcarbamylase, chloroplastic ornithine transcarbamylase, chloroplastic ornithine carbamoyltransferase, chloroplastic ornithine carbamoyltransferase, chloroplastic ornithine carbamoyltransferase, chloroplastic ornithine carbamoyltransferase, chloroplastic ornithine carbamoyltransferase, chloroplastic ornithine transcarbamylase, chloroplastic ornithine transcarbamylase, chloroplastic ornithine transcarbamylase, chloroplastic ornithine transcarbamylase, chloroplastic uncharacterized protein ornithine carbamoyltransferase, chloroplastic ornithine carbamoyltransferase, chloroplastic-like ornithine carbamoyltransferase, chloroplastic ornithine transcarbamylase, chloroplastic ornithine carbamoyltransferase, chloroplastic ornithine transcarbamylase, chloroplastic-like ornithine transcarbamylase, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 12
ath03010 Ribosome 4
ath00290 Valine, leucine and isoleucine biosynthesis 4
ath01210 2-Oxocarboxylic acid metabolism 4
ath00300 Lysine biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 9
gma00220 Arginine biosynthesis 4
gma00300 Lysine biosynthesis 4
gma00261 Monobactam biosynthesis 3
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 7
gma00220 Arginine biosynthesis 4
gma03010 Ribosome 2
gma01240 Biosynthesis of cofactors 2
gma00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 9
osa01210 2-Oxocarboxylic acid metabolism 6
osa00220 Arginine biosynthesis 4
osa01200 Carbon metabolism 4
osa00250 Alanine, aspartate and glutamate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 5
zma04141 Protein processing in endoplasmic reticulum 2
zma00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 8
zma01210 2-Oxocarboxylic acid metabolism 3
zma00220 Arginine biosynthesis 3
zma04141 Protein processing in endoplasmic reticulum 2
zma00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 9
bra01210 2-Oxocarboxylic acid metabolism 5
bra00290 Valine, leucine and isoleucine biosynthesis 4
bra00190 Oxidative phosphorylation 3
bra00770 Pantothenate and CoA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
vvi01230 Biosynthesis of amino acids 3
vvi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 8
mtr00061 Fatty acid biosynthesis 2
mtr01040 Biosynthesis of unsaturated fatty acids 2
mtr01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00220 Arginine biosynthesis 2
mtr01230 Biosynthesis of amino acids 2
mtr00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 6
tae00350 Tyrosine metabolism 3
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00650 Butanoate metabolism 3
tae00660 C5-Branched dibasic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 6
tae00350 Tyrosine metabolism 3
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00650 Butanoate metabolism 3
tae00660 C5-Branched dibasic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 4
hvu01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 4
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00020 Citrate cycle (TCA cycle) 2
ghi00260 Glycine, serine and threonine metabolism 2
ghi00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 4
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00020 Citrate cycle (TCA cycle) 2
ghi00260 Glycine, serine and threonine metabolism 2
ghi00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 11
bna00300 Lysine biosynthesis 7
bna00220 Arginine biosynthesis 4
bna00470 D-Amino acid metabolism 3
bna01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 11
bna00300 Lysine biosynthesis 7
bna00220 Arginine biosynthesis 4
bna00470 D-Amino acid metabolism 3
bna01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00220 Arginine biosynthesis 10
cre01230 Biosynthesis of amino acids 8
cre00250 Alanine, aspartate and glutamate metabolism 6
cre01210 2-Oxocarboxylic acid metabolism 4
cre00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 3
sbi03020 RNA polymerase 3
sbi03420 Nucleotide excision repair 3
sbi00261 Monobactam biosynthesis 2
sbi00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 12
sot00230 Purine metabolism 3
sot01232 Nucleotide metabolism 3
sot01240 Biosynthesis of cofactors 3
sot00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 9
cit00620 Pyruvate metabolism 8
cit01230 Biosynthesis of amino acids 8
cit01210 2-Oxocarboxylic acid metabolism 7
cit01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 4
bdi00860 Porphyrin metabolism 3
bdi03040 Spliceosome 2
bdi04141 Protein processing in endoplasmic reticulum 2
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 5
nta00061 Fatty acid biosynthesis 4
nta01212 Fatty acid metabolism 4
nta00220 Arginine biosynthesis 4
nta01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 4
nta00220 Arginine biosynthesis 4
nta01230 Biosynthesis of amino acids 4
nta00190 Oxidative phosphorylation 4
nta00061 Fatty acid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843869 100796780 100775828 101263020 101246902 9269231 100284885 100280306 103830654 100243725 7477624 25490205 25482166 123128123 123137917 123403689 107943527 107905438 106353674 106353531 5716689 8073861 102591304 102598576 102618690 100846818 107819553 107822172
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